View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10234_low_27 (Length: 238)
Name: NF10234_low_27
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10234_low_27 |
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| [»] scaffold0406 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5664082 - 5664308
Alignment:
| Q |
1 |
tcatagatttttgatatcatcttgtcatgcattgcttttcatggttgatcaatttatcaagtgttacctccaccgtgatagtaaatttgtgtcatctctt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5664082 |
tcatagatttttgatatcatcttgtcatgcattgctttttatggttgatcaatttgacaagtgttacctccaccgtgatagtaaatttgtgtcacttctt |
5664181 |
T |
|
| Q |
101 |
gtcataatatttgttatcggtctcc--tccaatcttgttgaagacttccaataatggtcattcttgctcattagttgctctagtaattttccttgtgagt |
198 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5664182 |
gtcataatatttgttatcggtctcctttccaatcttgttgaagacttccaataatggtcattcttgctcattagttgctctagtaattttccttgcgagt |
5664281 |
T |
|
| Q |
199 |
ctccttgtcactcttg-tgaagaatct |
224 |
Q |
| |
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|||||||||||| ||| |||||||||| |
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| T |
5664282 |
ctccttgtcacttttgttgaagaatct |
5664308 |
T |
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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 22055799 - 22055904
Alignment:
| Q |
12 |
tgatatcatcttgtcatgcattg---cttttcatggttgatcaatttatcaagtgttacctccaccgtgatagtaaatttgtgtcatctcttgtcataat |
108 |
Q |
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||||||||||| |||||||||| |||||||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||| ||||| |||||| |
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| T |
22055799 |
tgatatcatctcctcatgcattgatacttttcatagttgatcaattttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataat |
22055898 |
T |
|
| Q |
109 |
atttgt |
114 |
Q |
| |
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| |||| |
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| T |
22055899 |
acttgt |
22055904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 22055949 - 22055986
Alignment:
| Q |
157 |
cattcttgctcattagttgctctagtaattttccttgt |
194 |
Q |
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||||||||||| |||||| ||||||||||||||||||| |
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| T |
22055949 |
cattcttgctccttagtttctctagtaattttccttgt |
22055986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 6015 - 5936
Alignment:
| Q |
44 |
gttgatcaatttatcaagtgttacctccaccgtgatagtaaatttgtgtcatctcttgtcataatatttgttatcggtct |
123 |
Q |
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|||||||||||| || |||||||||||||| |||||| ||||||||| ||||| ||| ||||||||||||||| ||||| |
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| T |
6015 |
gttgatcaatttgacaggtgttacctccaccatgatagaaaatttgtgacatctattgccataatatttgttattggtct |
5936 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 28787743 - 28787655
Alignment:
| Q |
38 |
ttcatggttgatcaatttatcaagtgttacctccaccgtgatagtaaatttgtgtcatctcttgtcataatatttgttatcggtctcct |
126 |
Q |
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|
||||| |||||||||||| || ||||||| ||||| | | ||||||||||||||| |||||| ||||||||||||||| |||||||| |
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| T |
28787743 |
ttcatagttgatcaatttgacaggtgttacatccactataacagtaaatttgtgtcacctcttgccataatatttgttattggtctcct |
28787655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 6824165 - 6824292
Alignment:
| Q |
2 |
catagatttttgatatcatcttgtcatgcattg---cttttcatggttgatcaatttatcaagtgttacctccaccgtgatagtaaatttgtgtcatctc |
98 |
Q |
| |
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||||||||| || |||||||| || ||||||| || ||||| |||||||||||| || |||||| ||||||| |||||| |||||||| || ||| |
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| T |
6824165 |
catagatttgtgttatcatctcctcctgcattgaaactcttcatagttgatcaatttgacaggtgttagctccaccatgatagagaatttgtgccacctc |
6824264 |
T |
|
| Q |
99 |
ttgtcataatatttgttatcggtctcct |
126 |
Q |
| |
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||| ||||||||||||||| | |||||| |
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| T |
6824265 |
ttgccataatatttgttattgatctcct |
6824292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 17525880 - 17525951
Alignment:
| Q |
76 |
tgatagtaaatttgtgtcatctcttgtcataatatttgttatcggtctcctcca-atcttgttgaagacttc |
146 |
Q |
| |
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|||||| ||||||||| || |||||| ||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
17525880 |
tgataggaaatttgtgccacctcttgccataatatttgttattggtctccttgtgatcttgttgaagacttc |
17525951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 1275527 - 1275629
Alignment:
| Q |
2 |
catagatttttgatatcatcttgtcatgcattg---cttttcatggttgatcaatttatcaagtgttacctccaccgtgatagtaaatttgtgtcatctc |
98 |
Q |
| |
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||||||||| |||||||||||| || | ||||| || ||||| |||||| ||||| ||||| ||||||||||| |||||||| |||||||| | ||| |
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| T |
1275527 |
catagatttgtgatatcatcttttcctacattgatactcttcatagttgattaatttgacaagtcttacctccaccatgatagtacatttgtgttacctc |
1275626 |
T |
|
| Q |
99 |
ttg |
101 |
Q |
| |
|
||| |
|
|
| T |
1275627 |
ttg |
1275629 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 12739007 - 12738970
Alignment:
| Q |
157 |
cattcttgctcattagttgctctagtaattttccttgt |
194 |
Q |
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||||||| ||| |||||||||||||||||||||||||| |
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| T |
12739007 |
cattctttctccttagttgctctagtaattttccttgt |
12738970 |
T |
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