View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10234_low_28 (Length: 236)
Name: NF10234_low_28
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10234_low_28 |
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| [»] scaffold0398 (3 HSPs) |
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Alignment Details
Target: scaffold0398 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: scaffold0398
Description:
Target: scaffold0398; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 15565 - 15622
Alignment:
| Q |
44 |
ataaaaataatgatcttgatgtatgtttatgtttggtatcatgttgtgccagaatcac |
101 |
Q |
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| T |
15565 |
ataaaaatgatgatcttcatgtatgtgtatgtttggtatcatgttgtgccagaatcac |
15622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0398; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 15709 - 15754
Alignment:
| Q |
113 |
taccaaatataggcaaagtcaaacatatagagtgtgtccttaaacc |
158 |
Q |
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| T |
15709 |
taccaaatataggcaaagtcaaacatatagagtgtgtccttaaacc |
15754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0398; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 15446 - 15476
Alignment:
| Q |
11 |
tgactgattgcaatttacatgtgggtgattg |
41 |
Q |
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| T |
15446 |
tgactgattgcaatttacatgtgggtgattg |
15476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 43040774 - 43040729
Alignment:
| Q |
113 |
taccaaatataggcaaagtcaaacatatagagtgtgtccttaaacc |
158 |
Q |
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| T |
43040774 |
taccaaatataggcaaagtcaaacatatagagtgtgtccttaaacc |
43040729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 43040918 - 43040861
Alignment:
| Q |
44 |
ataaaaataatgatcttgatgtatgtttatgtttggtatcatgttgtgccagaatcac |
101 |
Q |
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|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
43040918 |
ataaaaatgatgatcttcatgtatgtgtatgtttggtatcatgttgtgccagaatcac |
43040861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 43041037 - 43041007
Alignment:
| Q |
11 |
tgactgattgcaatttacatgtgggtgattg |
41 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
43041037 |
tgactgattgcaatttacatgtgggtgattg |
43041007 |
T |
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