View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10234_low_34 (Length: 224)

Name: NF10234_low_34
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10234_low_34
NF10234_low_34
[»] chr8 (6 HSPs)
chr8 (23-180)||(39199966-39200123)
chr8 (23-101)||(30170724-30170803)
chr8 (26-87)||(14127256-14127317)
chr8 (36-102)||(28772132-28772199)
chr8 (23-100)||(43066589-43066667)
chr8 (25-100)||(26629107-26629183)
[»] chr7 (10 HSPs)
chr7 (99-186)||(23889530-23889617)
chr7 (99-186)||(23901743-23901830)
chr7 (99-183)||(36379054-36379138)
chr7 (39-101)||(8352771-8352834)
chr7 (23-101)||(48395245-48395324)
chr7 (23-84)||(24957186-24957247)
chr7 (120-183)||(36380331-36380391)
chr7 (23-98)||(6892628-6892704)
chr7 (23-87)||(17909045-17909109)
chr7 (39-98)||(34978296-34978356)
[»] chr2 (4 HSPs)
chr2 (23-99)||(13453950-13454027)
chr2 (23-100)||(9979094-9979172)
chr2 (23-98)||(31629604-31629680)
chr2 (23-99)||(31227547-31227622)
[»] scaffold0418 (1 HSPs)
scaffold0418 (120-177)||(6199-6253)
[»] chr4 (3 HSPs)
chr4 (120-177)||(40495780-40495834)
chr4 (23-101)||(35206165-35206244)
chr4 (23-98)||(56215605-56215681)
[»] chr5 (2 HSPs)
chr5 (23-99)||(43057434-43057511)
chr5 (23-100)||(30838360-30838438)
[»] scaffold1625 (1 HSPs)
scaffold1625 (26-100)||(779-854)
[»] chr6 (1 HSPs)
chr6 (39-101)||(17417247-17417309)
[»] chr3 (2 HSPs)
chr3 (39-101)||(39901588-39901651)
chr3 (120-183)||(37987528-37987588)
[»] chr1 (2 HSPs)
chr1 (23-97)||(1523289-1523364)
chr1 (23-100)||(35883602-35883680)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 39199966 - 39200123
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtacaatatcatttctctttcccttttgttctactgccaat 122  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||    
T  39199966 ataaaaacacatttgggtatgagagagatagttatttcaaaaattgtcaaataatggttgtacaatatcatttccctttcccttttgttctactgccaat 39200065  T
Q  123 gtcattgccaaccttcctatttgtttttcataacaaggatctaagactaacaactcat 180  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39200066 gtcattgccaaccttcctatttgtttttcataacaaggatctgagactaacaactcat 39200123  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 30170724 - 30170803
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctcttt 101  Q
    |||||||||||| || ||||||||||||| ||| || ||||| |||||||| |||| |||||| ||||||||||||||||    
T  30170724 ataaaaacacatgtgagtatgagagagatggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctcttt 30170803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 14127317 - 14127256
Alignment:
Q  26 aaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtacaa 87  Q
    ||||||||| || ||||||||||||| ||| ||||||||||||||||| |||| ||||||||    
T  14127317 aaaacacatgtgagtatgagagagatggttgttccaaaaattgtcaaaaagtggttgtacaa 14127256  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 28772132 - 28772199
Alignment:
Q  36 tgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctctttc 102  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||| | |||||||||||||||||    
T  28772132 tgggtatgagagagaaagttatcacaaaaattgtcaaaaaatggttgttcaaatatcatttctctttc 28772199  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 43066589 - 43066667
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctctt 100  Q
    |||||||||||| ||| ||||||||||||  || || ||||| |||| ||| |||| |||||| |||||||||||||||    
T  43066589 ataaaaacacatatggatatgagagagatgattgtttcaaaagttgttaaaaagtggttgtacaaatatcatttctctt 43066667  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 26629107 - 26629183
Alignment:
Q  25 aaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctctt 100  Q
    ||||| |||| || ||||||||||||  ||| || ||||| |||||||| |||| |||||| |||||||||||||||    
T  26629107 aaaaaaacatgtgagtatgagagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctctt 26629183  T

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Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 23889617 - 23889530
Alignment:
Q  99 tttcccttttgttctactgccaatgtcattgccaaccttcctatttgtttttcataacaaggatctaagactaacaactcattttggt 186  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||    
T  23889617 tttcccttttgttctactgccgatgtcattgccaacctttctattcgtttttcataacaaggatctaaaactaacaactcattttggt 23889530  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 23901830 - 23901743
Alignment:
Q  99 tttcccttttgttctactgccaatgtcattgccaaccttcctatttgtttttcataacaaggatctaagactaacaactcattttggt 186  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||    
T  23901830 tttcccttttgttctactgccgatgtcattgccaacctttctattcgtttttcataacaaggatctaaaactaacaactcattttggt 23901743  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 36379054 - 36379138
Alignment:
Q  99 tttcccttttgttctactgccaatgtcattgccaaccttcctatttgtttttcataacaaggatctaagactaacaactcatttt 183  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||    
T  36379054 tttcccttttgttctactgctgatgtcattgccaacctttctattcgtttttcataacaatgatctaagactaacaactcatttt 36379138  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 8352834 - 8352771
Alignment:
Q  39 gtatgagagagatagttattccaaaaattgtcaaatagtgattgta-caatatcatttctcttt 101  Q
    ||||||||||||| ||| || |||||||||||||| |||| |||||  ||||||||||||||||    
T  8352834 gtatgagagagatggttgtttcaaaaattgtcaaaaagtggttgtataaatatcatttctcttt 8352771  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 48395324 - 48395245
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtacaa-tatcatttctcttt 101  Q
    ||||||||| || || |||| ||||||| |||| || ||||| |||||||| |||| |||||||| ||||||||||||||    
T  48395324 ataaaaacatatgtgagtataagagagagagttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctcttt 48395245  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 24957186 - 24957247
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgta 84  Q
    |||||||||||| || ||||||||||||  ||| | ||||||||||||||| |||| |||||    
T  24957186 ataaaaacacatgtgagtatgagagagagggttgtgccaaaaattgtcaaaaagtggttgta 24957247  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 36380391 - 36380331
Alignment:
Q  120 aatgtcattgccaaccttcctatttgtttttcataacaaggatctaagactaacaactcatttt 183  Q
    |||||||||||||||||| ||||| |||||||||   |||||||||||| || |||||| ||||    
T  36380391 aatgtcattgccaacctttctattcgtttttcat---aaggatctaagattagcaactcgtttt 36380331  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 6892628 - 6892704
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctc 98  Q
    |||||||||||| || ||||||||||||  ||| || || || |||||||| |||| |||||| |||||||||||||    
T  6892628 ataaaaacacatgtgagtatgagagagagggttgtttcataagttgtcaaagagtggttgtacaaatatcatttctc 6892704  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 17909045 - 17909109
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtacaa 87  Q
    |||||||||||| || ||| ||||||||  |||||| ||||| |||||||| | |||||||||||    
T  17909045 ataaaaacacatgtgagtacgagagagagggttatttcaaaagttgtcaaaaaatgattgtacaa 17909109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 34978356 - 34978296
Alignment:
Q  39 gtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctc 98  Q
    |||||||||||| |||| |  |||||||||||||| ||||||||| | |||||||||||||    
T  34978356 gtatgagagagaaagttgtcacaaaaattgtcaaaaagtgattgttcaaatatcatttctc 34978296  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 13453950 - 13454027
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtaca-atatcatttctct 99  Q
    |||||||||||| || |||||||||||| | || || ||||| |||||||| |||||||||||| |||||||||||||    
T  13453950 ataaaaacacatgtgagtatgagagagagaattgtttcaaaagttgtcaaaaagtgattgtacagatatcatttctct 13454027  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 9979172 - 9979094
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctctt 100  Q
    |||||||||||| || ||||||||||||| ||| |  |||||||||| ||| |||| |||||| |||||||||||||||    
T  9979172 ataaaaacacatgtgagtatgagagagatggttgtcacaaaaattgtgaaaaagtggttgtacaaatatcatttctctt 9979094  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 31629680 - 31629604
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctc 98  Q
    |||||||||||| || |||| |||||||| ||| |||||||| |||||||| |||  |||||| |||||||||||||    
T  31629680 ataaaaacacatgtgagtattagagagatggttgttccaaaagttgtcaaaaagtagttgtacaaatatcatttctc 31629604  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 31227547 - 31227622
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtaca-atatcatttctct 99  Q
    ||||||| |||| || ||||||||||||  ||| || ||||| |||||||| |||||||||||| |||||||||||||    
T  31227547 ataaaaaaacatgtgagtatgagagaga--gttgtttcaaaagttgtcaaaaagtgattgtacacatatcatttctct 31227622  T

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Target: scaffold0418 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 6199 - 6253
Alignment:
Q  120 aatgtcattgccaaccttcctatttgtttttcataacaaggatctaagactaacaact 177  Q
    |||||||||||||||||| |||||||||||||||   ||||||||||||||| |||||    
T  6199 aatgtcattgccaacctttctatttgtttttcat---aaggatctaagactagcaact 6253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 40495834 - 40495780
Alignment:
Q  120 aatgtcattgccaaccttcctatttgtttttcataacaaggatctaagactaacaact 177  Q
    |||||||||||||||||| |||||||||||||||   ||||||||||||||| |||||    
T  40495834 aatgtcattgccaacctttctatttgtttttcat---aaggatctaagactagcaact 40495780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 35206244 - 35206165
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctcttt 101  Q
    |||||||||||| || |||| ||||||| |||| || ||||| || ||||| ||||||||||| || |||||||||||||    
T  35206244 ataaaaacacatgtgagtataagagagagagttgtttcaaaagttatcaaaaagtgattgtacaaacatcatttctcttt 35206165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 56215681 - 56215605
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctc 98  Q
    |||||||||||| || |||||||||||||  ||  | ||||| |||||||| |||| |||||| |||||||||||||    
T  56215681 ataaaaacacatgtgagtatgagagagatgattggttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 56215605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 43057511 - 43057434
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctct 99  Q
    ||||||||| || || |||||||||||  ||||||| ||||| |||||||| |||| |||||| ||||||||||||||    
T  43057511 ataaaaacatatgtgagtatgagagagggagttatttcaaaagttgtcaaaaagtggttgtacaaatatcatttctct 43057434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 30838360 - 30838438
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctctt 100  Q
    |||||||||||| || ||||||||||||| ||| || ||||| |||||||| |||   ||||| |||||||||||||||    
T  30838360 ataaaaacacatgtgagtatgagagagatggttgtttcaaaagttgtcaaaaagtagatgtacaaatatcatttctctt 30838438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1625 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 779 - 854
Alignment:
Q  26 aaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctctt 100  Q
    ||||||||| || ||||||||||||| ||| || ||||| |||||||| | ||||||||| ||||||||| |||||    
T  779 aaaacacatgtgagtatgagagagatggttgtttcaaaagttgtcaaaaaatgattgtacaaatatcattcctctt 854  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 17417247 - 17417309
Alignment:
Q  39 gtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctcttt 101  Q
    |||||||||||| |||| | ||||||||||||| ||| ||||||||| ||||||||||||||||    
T  17417247 gtatgagagagaaagttgt-ccaaaaattgtcacataatgattgtacaaatatcatttctcttt 17417309  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 39901651 - 39901588
Alignment:
Q  39 gtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctcttt 101  Q
    |||||||| ||| |||| ||||||||||| ||||| | ||||||||| ||||||||||||||||    
T  39901651 gtatgagatagaaagttgttccaaaaattatcaaaaaatgattgtacaaatatcatttctcttt 39901588  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 37987528 - 37987588
Alignment:
Q  120 aatgtcattgccaaccttcctatttgtttttcataacaaggatctaagactaacaactcatttt 183  Q
    |||||||||| ||||||| ||||| |||||||||   ||||||||||||||| |||||| ||||    
T  37987528 aatgtcattgtcaacctttctattcgtttttcat---aaggatctaagactagcaactcgtttt 37987588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 1523289 - 1523364
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttct 97  Q
    |||||||||||| |  |||||| ||||||||||||| ||||| || ||||| |||| |||||| ||||||||||||    
T  1523289 ataaaaacacatgtaagtatgacagagatagttatttcaaaagttatcaaaaagtggttgtacaaatatcatttct 1523364  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 35883602 - 35883680
Alignment:
Q  23 ataaaaacacatttgggtatgagagagatagttattccaaaaattgtcaaatagtgattgtac-aatatcatttctctt 100  Q
    |||||||||||| || |||||||||| || ||| || ||||| |||||||| | | ||||||| |||||||||||||||    
T  35883602 ataaaaacacatgtgagtatgagagatatggttgtttcaaaagttgtcaaaaaataattgtacaaatatcatttctctt 35883680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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