View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10234_low_4 (Length: 391)
Name: NF10234_low_4
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10234_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 28885367 - 28885034
Alignment:
| Q |
18 |
ctccacacactctaaaacaatcgaagattcgaaggacaccttcaccgtgtagcttccctatggtccactcaacggctgcggcgaaagcggtcaatacacc |
117 |
Q |
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| T |
28885367 |
ctccacacaaccttaaacaatcgaagattcgaaggacaccttcaccgtgtagcttccctatggtccactcaacggctgcggcgaaagcggtcaatacacc |
28885268 |
T |
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| Q |
118 |
cccctatcctcctccactctgtcaattnnnnnnncatataccttcgcctattatctcttttcttacaacacagcaaatacaattatatagctacagcttt |
217 |
Q |
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| T |
28885267 |
cccctatcctcctccactctgtcaattaaaaaaacatataccttcgcctattatctcttttcttacaacacagcaaatacaattatatagctacagcttt |
28885168 |
T |
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| Q |
218 |
caaaacaagtatcaatcaacatataatttgagttaagacaatacagatgcttgtagttctcagtgtaagtttagttgcgcgtttgaatagttatatttta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28885167 |
caaaacaagtatcaatcaacatataatttgagttaagacaatacagatacttgtagttctcagtgtaagtttagttgcgcgtttgaatagttatatttta |
28885068 |
T |
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| Q |
318 |
aatggaattaatctttgcaaaattgattcattac |
351 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
28885067 |
aatggaattaatctttgcaaaattgattcattac |
28885034 |
T |
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