View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10234_low_8 (Length: 352)

Name: NF10234_low_8
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10234_low_8
NF10234_low_8
[»] chr5 (7 HSPs)
chr5 (1-352)||(5663612-5663963)
chr5 (169-351)||(5046332-5046515)
chr5 (169-351)||(5047103-5047286)
chr5 (169-351)||(5047874-5048057)
chr5 (21-217)||(5664702-5664895)
chr5 (69-122)||(5046572-5046625)
chr5 (69-122)||(5047343-5047396)
[»] chr4 (7 HSPs)
chr4 (21-351)||(24853230-24853562)
chr4 (169-336)||(51246521-51246689)
chr4 (169-337)||(17525522-17525691)
chr4 (26-351)||(28786894-28787223)
chr4 (169-309)||(28787887-28788027)
chr4 (27-348)||(24856133-24856448)
chr4 (72-122)||(51246738-51246788)
[»] chr7 (1 HSPs)
chr7 (169-351)||(22622406-22622589)
[»] scaffold0406 (1 HSPs)
scaffold0406 (58-351)||(6164-6460)
[»] chr1 (5 HSPs)
chr1 (191-351)||(22055518-22055679)
chr1 (195-319)||(22056597-22056721)
chr1 (178-270)||(29371869-29371961)
chr1 (19-123)||(22056427-22056530)
chr1 (281-347)||(29373056-29373123)
[»] chr8 (1 HSPs)
chr8 (158-351)||(1275221-1275412)
[»] chr3 (6 HSPs)
chr3 (169-337)||(12739240-12739409)
chr3 (169-337)||(12738089-12738258)
chr3 (192-331)||(15022963-15023103)
chr3 (270-351)||(1896783-1896865)
chr3 (270-351)||(1906229-1906311)
chr3 (292-337)||(12737463-12737509)
[»] chr2 (1 HSPs)
chr2 (169-329)||(20978872-20979034)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 5663612 - 5663963
Alignment:
Q  1 ttcataacttatgagtatattgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  5663612 ttcataacttacgagtatattgttagaaaatatatattgtgggtgctagtggtacaatggttagtagcattggacaagaagacacacattgataaatagc 5663711  T
Q  101 tcattgtagaaggagagaatatagtatatggaagcccttaatatattgtaattgtatttaaatgtttaaatacaatcgcacccatataattctatttata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663712 tcattgtagaaggagagaatatagtatatggaagcccttaatatattgtaattgtatttaaatgtttaaatacaatcgcacccatataattctatttata 5663811  T
Q  201 agtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataatttaatttag 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5663812 agtgattgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctacaatttaatttag 5663911  T
Q  301 acattaatagaacaatctaaaacatgtagcaactttaagctactctagtttc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663912 acattaatagaacaatctaaaacatgtagcaactttaagctactctagtttc 5663963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 169 - 351
Target Start/End: Complemental strand, 5046515 - 5046332
Alignment:
Q  169 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 268  Q
    |||||||| |||| ||||||| |||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||| || | ||||||  |||||||    
T  5046515 aatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctacacaagattat 5046416  T
Q  269 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctagttt 351  Q
    |||||||||||||||||| ||| ||||  |||||||||||| ||||||||| ||||||| |||||||||| | || ||||||||    
T  5046415 tatagatgtttctaggctttaacttaacctagacattaataaaacaatctataaacatgaagcaactttatgttattctagttt 5046332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 169 - 351
Target Start/End: Complemental strand, 5047286 - 5047103
Alignment:
Q  169 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 268  Q
    |||||||| |||| ||||||| | |||||||| ||||||| |||||||||||||||||||| | ||||||||||||||| || | |||| |  |||||||    
T  5047286 aatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctagacaagattat 5047187  T
Q  269 tatagatgtttctaggctataatttaatttagacattaatagaacaatct-aaaacatgtagcaactttaagctactctagttt 351  Q
    |||||||| ||| ||||| ||| ||||  |||||||||||||||||||||  |||||||||||||||||| | || ||||||||    
T  5047186 tatagatggttcaaggctttaacttaacctagacattaatagaacaatctcgaaacatgtagcaactttatgttattctagttt 5047103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 169 - 351
Target Start/End: Complemental strand, 5048057 - 5047874
Alignment:
Q  169 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 268  Q
    |||||||| |||| ||||||| | |||||||| ||||||| |||||||| ||||||||||| | ||||||||||||||| || | ||||||  |||||||    
T  5048057 aatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatctaggcctttgtttgccttatctacacaagattat 5047958  T
Q  269 tatagatgtttctaggctataatttaatttagacattaatagaacaatct-aaaacatgtagcaactttaagctactctagttt 351  Q
    |||||||| ||| ||||| ||| ||||  |||||||||||||||||||||  |||||||||||||||||| | || ||||||||    
T  5047957 tatagatggttcaaggctttaacttaacctagacattaatagaacaatctcgaaacatgtagcaactttatgttattctagttt 5047874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 5664702 - 5664895
Alignment:
Q  21 tgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaat 120  Q
    |||||||||||||||| ||||| ||| ||| ||| | ||||   | ||||||||||||||| ||||||||||||| ||  | ||||||| ||||||||||    
T  5664702 tgttagaaaatatatagtgtggaagcaagttgtagagtggtatgtggcattggacaagaaggcacacattggtaattaatttattgtaggaggagagaat 5664801  T
Q  121 atagtatatggaagcccttaata-tattgtaattgtatttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgttt 217  Q
    ||  || | ||||||||| |||| |||||| |||||||||||| | || |||||||| |||||||||||| ||    |||| ||||||||||||||||    
T  5664802 atgatacagggaagccctcaatattattgtcattgtatttaaaagcttgaatacaattgcacccatataagtc----tataggtgcttgaagatgttt 5664895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 5046625 - 5046572
Alignment:
Q  69 attggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 122  Q
    ||||||||| | ||||| ||||||||| ||||||||||||| ||||||||||||    
T  5046625 attggacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatat 5046572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 5047396 - 5047343
Alignment:
Q  69 attggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 122  Q
    ||||||||| | ||||| ||||||||| ||||||||||||| ||||||||||||    
T  5047396 attggacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatat 5047343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 351
Target Start/End: Complemental strand, 24853562 - 24853230
Alignment:
Q  21 tgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaat 120  Q
    |||||||||| ||||| ||| ||||||||||||  | || ||| ||||||||||||||| |||||| |||||||| ||||||||||||| |||| |||||    
T  24853562 tgttagaaaa-atatagtgtaggagctagtggtggagtgtttagtagcattggacaagaggacacatattggtaattagctcattgtaggaggaaagaat 24853464  T
Q  121 atagtatatggaagcccttaatat-attgtaattgtat-ttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttc 218  Q
    ||  |||   |||||| | ||||| ||||  |||| || ||||| | || |||||||| ||| ||| |||| |||||||||| ||| | ||||||||||     
T  24853463 atgatatgatgaagccttcaatattattgacattgcatcttaaaggcttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttt 24853364  T
Q  219 taaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataatttaatttagacattaatagaacaatct 318  Q
    || |||||||| | | ||||||||||||| || |||||||||||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||    
T  24853363 tagaactagaataatttaggcctttgtttgccttttctacattagattattatagatgtttcttggctataacttaatttatatattaatagaacaatct 24853264  T
Q  319 a-aaacatgtagcaactttaagctactctagttt 351  Q
    | |||||| ||| ||||||| | || ||||||||    
T  24853263 agaaacatttagaaactttatgttattctagttt 24853230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 169 - 336
Target Start/End: Complemental strand, 51246689 - 51246521
Alignment:
Q  169 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 268  Q
    |||||||| |||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| | ||||||||||||||| || | ||||||  |||||||    
T  51246689 aatacaattgcacccatataagtctacttataggtgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctacacaagattat 51246590  T
Q  269 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaacttt 336  Q
    |||||||||||||||||| ||| ||||  |||||||||||||| ||||||| |||||| ||||||||||    
T  51246589 tatagatgtttctaggctttaacttaacctagacattaatagagcaatctagaaacatctagcaacttt 51246521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 169 - 337
Target Start/End: Original strand, 17525522 - 17525691
Alignment:
Q  169 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 268  Q
    ||||||||  ||| ||||||| |||||||||||| ||||| ||||||||||| |||||||| | ||||||||||||||| || | ||||||  |||||||    
T  17525522 aatacaatttcacacatataagtctatttataagcgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctacacaagattat 17525621  T
Q  269 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaacttta 337  Q
    |||||||||||||||||| ||| ||||  ||||||||||||||| |||| | ||||||||||||||||||    
T  17525622 tatagatgtttctaggctttaacttaacctagacattaatagaataatcaagaaacatgtagcaacttta 17525691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 351
Target Start/End: Complemental strand, 28787223 - 28786894
Alignment:
Q  26 gaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatatagt 125  Q
    ||||| ||||| ||| ||||||| ||||| | |||||| |||||||| |||||| |||||||||| |||| || |||||| ||| |||||| |||||  |    
T  28787223 gaaaaaatatagtgtaggagctaatggtagagtggttagtagcattgaacaagaggacacacattagtaattacctcattataggaggagataatatgat 28787124  T
Q  126 ata-tgg--aagcccttaatatattgta-attgtatttaaatgt-ttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttcta 220  Q
    ||  |||  ||||| | |||||  | || |||| || |||| |  || |||||||| ||||| |||||  |||||||||| |||||||||||||||||||    
T  28787123 atggtggtgaagccttcaatattatatacattgcatctaaaaggcttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttcta 28787024  T
Q  221 aaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataatttaatttagacattaatagaacaatcta- 319  Q
     |||||  | | | ||||||||||| |||| ||||||||| |||| ||||||||||||||||||||| || |||||  ||||||||||| |||||| ||     
T  28787023 gaacta--ataatttaggcctttgtattccttttctacataagataattatagatgtttctaggctacaacttaatcgagacattaatataacaatttag 28786926  T
Q  320 aaacatgtagcaactttaagctactctagttt 351  Q
    |||||||||||||||||||| || ||||||||    
T  28786925 aaacatgtagcaactttaagttattctagttt 28786894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 309
Target Start/End: Complemental strand, 28788027 - 28787887
Alignment:
Q  169 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 268  Q
    |||||||| |||||||||||  |||||||||| ||| ||||||||||||||| |||||||| | |||||||||||||||||| ||| |||||||||| ||    
T  28788027 aatacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatctaggcctttgttttccttttgtacattagataat 28787928  T
Q  269 tatagatgtttctaggctataatttaatttagacattaata 309  Q
    ||||||| ||||||||||| || |||||  ||||| |||||    
T  28787927 tatagatatttctaggctacaacttaatcgagacaataata 28787887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 348
Target Start/End: Complemental strand, 24856448 - 24856133
Alignment:
Q  27 aaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatatagta 126  Q
    |||||||||||  |  |||||||||||  | || ||| ||||||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||  ||    
T  24856448 aaaatatatatcatatgagctagtggtggagtgtttagtagcattggacaagatgacacatattggtaattagctcattgtaggaggagagaatatgata 24856349  T
Q  127 tatggaagcccttaata-tattgtaattgtat-ttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaac 224  Q
    |   ||| |  | |||| |||||  |||| || ||||| | |  |||||||| ||| ||  |||| |||||||||| ||| | ||| ||||||||| |||    
T  24856348 tggtgaaactttcaatattattgacattgcatcttaaaggctggaatacaattgcatcctaataagtctatttataggtgttagaaaatgtttctagaac 24856249  T
Q  225 tagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaac 323  Q
    ||||| | ||||||||||||||| || || |||||||| |||        ||||| |||||| ||| ||||  |||||||||||||||||||||| ||||    
T  24856248 tagaataatctaggcctttgtttgcctttcctacatta-att--------tgtttataggctttaacttaaactagacattaatagaacaatctagaaac 24856158  T
Q  324 atgtagcaactttaagctactctag 348  Q
    |||||||||||||||| || |||||    
T  24856157 atgtagcaactttaagttattctag 24856133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 51246788 - 51246738
Alignment:
Q  72 ggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 122  Q
    |||||||| |||||||||| | || ||||||||||||| ||||||||||||    
T  51246788 ggacaagaggacacacattaggaattagctcattgtaggaggagagaatat 51246738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 169 - 351
Target Start/End: Original strand, 22622406 - 22622589
Alignment:
Q  169 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 268  Q
    |||||||| ||||||||||||  |||||||||||||| |||||||||||||| || ||||| | |||||| |||||||| || ||||||||||||| |||    
T  22622406 aatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatctaggtctttgtttgccttttctacattagaatat 22622505  T
Q  269 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctagttt 351  Q
    | ||||||||| ||||||| |||||||| |||| ||||||||||||||||| |||||||| |||||||||||||| | ||||||    
T  22622506 tgtagatgtttttaggctacaatttaatctagatattaatagaacaatctagaaacatgtggcaactttaagctattatagttt 22622589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 58 - 351
Target Start/End: Complemental strand, 6460 - 6164
Alignment:
Q  58 tggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatatagtatatggaagcccttaatat-attgtaattgta 156  Q
    |||||| ||||||||||||||| |||||||||| | || ||||||||| ||| |||||| |||||  | |   |||||| | ||||| ||||  |||| |    
T  6460 tggttagtagcattggacaagatgacacacattaggaattagctcattataggaggagataatatgattttgtgaagccttcaatattattgacattgca 6361  T
Q  157 ttt-aaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttc 255  Q
    | | ||| | || ||||||||  ||||||||||| |||||||||| |||||||||| |||||||| |||||||| | ||||||||||||||| || | ||    
T  6360 tctcaaaggcttgaatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatctaggcctttgtttgccttatc 6261  T
Q  256 tacattagattattatagatgtttctaggctataatttaatttagacattaatagaacaatct-aaaacatgtagcaactttaagctactctagttt 351  Q
    | ||  ||||||||||||||||||||||||| ||| ||||  |||||||||||||||||||||  |||||||||||||||||| | || ||||||||    
T  6260 tgcacaagattattatagatgtttctaggctttaacttaacctagacattaatagaacaatctcgaaacatgtagcaactttatgttattctagttt 6164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 191 - 351
Target Start/End: Original strand, 22055518 - 22055679
Alignment:
Q  191 tctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataa 290  Q
    |||||||||||||||||||||||| ||||| ||||| || | |||||| |||||||| || ||| |||||||||||||||||||||||||||||||| ||    
T  22055518 tctatttataagtgcttgaagatgattctagaactaaaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaa 22055617  T
Q  291 tttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctagttt 351  Q
    |||||| ||||||||||| |||||||||| |||||| |||||| ||||||||| | ||||||    
T  22055618 tttaatctagacattaattgaacaatctagaaacatttagcaaatttaagctattatagttt 22055679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 195 - 319
Target Start/End: Original strand, 22056597 - 22056721
Alignment:
Q  195 tttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataattta 294  Q
    |||||| |||||||||||| |||||| |||||||| | ||||||| ||||||| || ||||||||||||||||| |||||||||| ||||||| || |||    
T  22056597 tttataggtgcttgaagatatttctagaactagaataatctaggcatttgtttgccttttctacattagattatcatagatgtttttaggctacaaatta 22056696  T
Q  295 atttagacattaatagaacaatcta 319  Q
    || |||||||||| |||||||||||    
T  22056697 atctagacattaacagaacaatcta 22056721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 270
Target Start/End: Complemental strand, 29371961 - 29371869
Alignment:
Q  178 gcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattatta 270  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| ||| ||| | ||||| | ||||||| || |||| |||||| |||||||    
T  29371961 gcacccatataaatctatttataagtgcttgaagatgtttataatacttgaataatctagacttttgtttgccttttccacattacattatta 29371869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 22056427 - 22056530
Alignment:
Q  19 attgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagaga 118  Q
    |||||| ||||| ||||| ||| ||||| | ||||| | | |||| ||||||||||||||| |||||| ||| |||| || |||||||||  ||||||||    
T  22056427 attgttggaaaa-atatagtgtaggagccaatggtagatttgttagtagcattggacaagaggacacatatttgtaattaactcattgtatgaggagaga 22056525  T
Q  119 atata 123  Q
    |||||    
T  22056526 atata 22056530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 29373123 - 29373056
Alignment:
Q  281 taggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactcta 347  Q
    ||||||| || ||||| |||| |||| |||||||||||| ||||||||||||||||||| ||| ||||    
T  29373123 taggctacaacttaatctagatattagtagaacaatctagaaacatgtagcaactttaaactattcta 29373056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 158 - 351
Target Start/End: Original strand, 1275221 - 1275412
Alignment:
Q  158 ttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttcta 257  Q
    ||||| |||| |||||||| |||||||||||  | || ||||| |||||||||| |||||||| |||||||    ||||||||||||||| || ||||||    
T  1275221 ttaaacgtttgaatacaattgcacccatatacctatacttataggtgcttgaaggtgtttctagaactagat---tctaggcctttgtttgccatttcta 1275317  T
Q  258 cattagattattatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctagttt 351  Q
    ||||||||||||||||||||||||| ||||||| |||||||| ||||||||| || |||||| ||||||||||||||||| || || ||||||||    
T  1275318 cattagattattatagatgtttctaagctataacttaatttatacattaataaaataatctagaaacatgtagcaactttgagttattctagttt 1275412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 169 - 337
Target Start/End: Complemental strand, 12739409 - 12739240
Alignment:
Q  169 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 268  Q
    |||||||| ||| ||| |||||||||||||||  |||||| ||||||||||| ||||| || | ||||||| ||||||| || ||||||||  |||||||    
T  12739409 aatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatctaggcttttgtttgccttttctacacaagattat 12739310  T
Q  269 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaacttta 337  Q
    |||||||||||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||||||||||    
T  12739309 tatagatgtttctaggctgtaacttaacctagatattaatagaacaatctagaaacatgtagcaacttta 12739240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 169 - 337
Target Start/End: Complemental strand, 12738258 - 12738089
Alignment:
Q  169 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 268  Q
    |||||||| ||||||| |||| | |||||||| ||||||| ||||||||||| ||||| ||   ||||||| ||||||| || ||||||||  |||| ||    
T  12738258 aatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaactaaaattatctaggcttttgtttgccttttctacacaagataat 12738159  T
Q  269 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaacttta 337  Q
    ||| |||||||||||||| ||  ||||| |||||||||||||||||||||| ||||||||||||||||||    
T  12738158 tattgatgtttctaggctttaccttaatctagacattaatagaacaatctacaaacatgtagcaacttta 12738089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 331
Target Start/End: Complemental strand, 15023103 - 15022963
Alignment:
Q  192 ctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataat 291  Q
    ||||||||| ||||||| ||||||||||| ||||| || | ||||||| ||||||| || | ||||||  |||||||||||||||||| ||| || |||     
T  15023103 ctatttataggtgcttgtagatgtttctagaactaaaataatctaggcatttgtttgccttatctacacaagattattatagatgtttttagactttaac 15023004  T
Q  292 ttaatttagacattaatagaacaatcta-aaacatgtagca 331  Q
    | ||  || ||||||||||||||||||| |||||| |||||    
T  15023003 tgaacctaaacattaatagaacaatctagaaacatatagca 15022963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 1896865 - 1896783
Alignment:
Q  270 atagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctagttt 351  Q
    |||||||||||||||||| || ||||  ||| ||| ||||||||||| || |||||||| |||||||||||||| ||||||||    
T  1896865 atagatgtttctaggctacaacttaacctagtcatcaatagaacaatatataaacatgtggcaactttaagctattctagttt 1896783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 1906311 - 1906229
Alignment:
Q  270 atagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctagttt 351  Q
    |||||||||||||||||| || ||||  ||| ||| ||||||||||| || |||||||| |||||||||||||| ||||||||    
T  1906311 atagatgtttctaggctacaacttaacctagtcatcaatagaacaatatataaacatgtggcaactttaagctattctagttt 1906229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 12737509 - 12737463
Alignment:
Q  292 ttaatttagacattaatagaacaatcta-aaacatgtagcaacttta 337  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||    
T  12737509 ttaatctagacattaatagaacaatctacaaacatgtagcaacttta 12737463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 329
Target Start/End: Original strand, 20978872 - 20979034
Alignment:
Q  169 aatacaatcgcacccatataattctatttataagtgctt-gaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagatta 267  Q
    |||| ||| |||||||||||| | |||||||| || ||| | ||||||||||| |||||||| | ||||  ||||||||| || | ||||||  | ||||    
T  20978872 aatataatggcacccatataagtttatttataggtactttgtagatgtttctagaactagaataatctatacctttgtttgccttatctacacaatatta 20978971  T
Q  268 ttatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtag 329  Q
    ||||||||||||||||||| ||| ||||  || |||| |||||||||||||| ||||||||||    
T  20978972 ttatagatgtttctaggctttaacttaacctaaacatgaatagaacaatctagaaacatgtag 20979034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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