View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10234_low_9 (Length: 345)
Name: NF10234_low_9
Description: NF10234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10234_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 4655974 - 4656258
Alignment:
| Q |
1 |
atatgactaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagcctttttctcgttgcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4655974 |
atatgactaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagcctttttctcattgcat |
4656073 |
T |
|
| Q |
101 |
tcaagttttcaaattgacctcatacataatcttttgaccattttcaataacattcttttattct--tatttttacatttcagctaataattgtaccgata |
198 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| |
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| T |
4656074 |
tcaagttttcaaattgacctcatacataatattttgaccattttcaataacattcttttattcttgtattcttacatttcagctcataattgtaccgata |
4656173 |
T |
|
| Q |
199 |
cctccgattgctcaagtaatgattgttcctacgagggggtgtcattatgcatgaatggtcaatgcatatgcatttacgagtaaag |
283 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4656174 |
tatccgattgctcaagtaatcattgttcctacgagggggtgtcattatgcatgaatggtcaatgcatatgcatttacgagtaaag |
4656258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 4647529 - 4647812
Alignment:
| Q |
1 |
atatgactaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagccttttt-ctcgttgca |
99 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | | |
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| T |
4647529 |
atatgaccaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagacttttttctcaccgta |
4647628 |
T |
|
| Q |
100 |
ttcaagttttcaaattgacctcatacataatcttttgaccattttcaataacattcttttattcttatttttacatttcagctaataattgtaccgatac |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4647629 |
ttcaagttttcaaattgacctcatacataatcttctgaccattttcaataacattcttttattcttatttttacatttcagctaataattgtaccgatac |
4647728 |
T |
|
| Q |
200 |
ctccgattgctcaagtaatgattgttcctacgagggggtgtcattatgcatgaatggtcaatgcatatgcatttacgagtaaag |
283 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4647729 |
ctccgattgctcaagtaatcattgttcctatgagggggtgtcattatgcatgaatggtcaatgtatatgcatttacgagtaaag |
4647812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 4647837 - 4647879
Alignment:
| Q |
286 |
aagcttacaattttacttatatgtcaaagtgaatgttgttact |
328 |
Q |
| |
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| T |
4647837 |
aagcttacaattttacttatatgtcaaagtgaatgttgttact |
4647879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 4656281 - 4656323
Alignment:
| Q |
286 |
aagcttacaattttacttatatgtcaaagtgaatgttgttact |
328 |
Q |
| |
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||| |||||||||||||||||||||| ||||||||||||||| |
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|
| T |
4656281 |
aagtttacaattttacttatatgtcacggtgaatgttgttact |
4656323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 31038189 - 31038244
Alignment:
| Q |
1 |
atatgactaagttttttaagtttgtttatactatgttcattttaatttctctattt |
56 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||| ||||||| |||||||||||| |
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|
| T |
31038189 |
atatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattt |
31038244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 23233451 - 23233497
Alignment:
| Q |
18 |
aagtttgtttatactatgttcattttaatttctctatttcttgttgt |
64 |
Q |
| |
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|||||| ||||||||||| |||||||| |||| |||||||||||||| |
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| T |
23233451 |
aagtttttttatactatgatcattttagtttccctatttcttgttgt |
23233497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 22815825 - 22815879
Alignment:
| Q |
18 |
aagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatg |
72 |
Q |
| |
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||||||||||||| ||| || |||| |||||||||||||||||||||| ||||| |
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| T |
22815825 |
aagtttgtttatattatactcctttttatttctctatttcttgttgttatcaatg |
22815879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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