View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10235_high_1 (Length: 711)
Name: NF10235_high_1
Description: NF10235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10235_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 18 - 702
Target Start/End: Original strand, 33170715 - 33171406
Alignment:
| Q |
18 |
aaatcattcacaatgtatcaaattgaataatgtaatgatgagtaagggtctagttatagtttgaacaccaggacttaggacaaaagagtggcattagaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33170715 |
aaatcattcacaatgtatcaaattgaataatgtaatgatgagtaagggtctagttatagtttgaacaccaggacttaggataaaagagtggcattagaaa |
33170814 |
T |
|
| Q |
118 |
attcctagttgattcaaatttcttggtgttacattacctggattacaaaaccttctagtccctcaaatttgtctatagcaatagccatctgaattccatg |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33170815 |
attcctagttgattcagatttcttggtgttacattacctggattacaaaaccttctagtccctcaaatttgtctatagcaatagccatctgaattccatg |
33170914 |
T |
|
| Q |
218 |
atttgctgcatttaatggaacaaatgccatgtcttggaccagactctcctggagtttatttagtccttgtgaaagagcatcttcggcttgctgagacgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33170915 |
atttgctgcatttaatggaacaaatgccatgtcttggaccagactctcctggagtttatttagtccttgtgaaagagcatcttcggcttgctgagacgac |
33171014 |
T |
|
| Q |
318 |
aggtgaagttttttaatgctaaacatctgttcatcagacaaaggctcaagttgtggcacaatgagctgtagcagnnnnnnnnnctaataatggttagtga |
417 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33171015 |
aggtgaagttttttgatgctaaacatctgttcatcagacaaaggctcaagttgtggcacaatgagctgtagcag-aaaaaaaactaataatggttagtga |
33171113 |
T |
|
| Q |
418 |
ttcgttgaggt--------taccgacttttaatctaattcgctattaagatcagatttgtacatttagaagctgggatgggcgagatcctccgatccata |
509 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
33171114 |
ttcgttgaggtttcgagagtaccgacttttaatctaatttgctattaagatcagatttgtacatttagaagctgtgatggccgagatcctccgatccata |
33171213 |
T |
|
| Q |
510 |
ggaaaagtcgctctacggatggtttccacacaccggagattaaatagaggggatcagcctttgcagcatccgttttcattctgaaaagatccgagtaatg |
609 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33171214 |
ggaaaagtcgctctacggatggtttccacacaccggagattaaatagaggggatcagcctttgcagcatccgttttcattctgaaaagatccgagtaatg |
33171313 |
T |
|
| Q |
610 |
attcaagacactctgaacaactagacggagctgcacttcggacgcattagtttgaaatgcatttctgagctcttcattccgcctatgcttctc |
702 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33171314 |
attcaagacactctgaacaactagacggagctgcacttcggacgcattagtttgaaatgcatttctgagctcttcattccgcctatggttctc |
33171406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 467 - 675
Target Start/End: Original strand, 25355778 - 25355986
Alignment:
| Q |
467 |
tgtacatttagaagctgggatgggcgagatcctccgatccataggaaaagtcgctctacggatggtttccacacaccggagattaaatagaggggatcag |
566 |
Q |
| |
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||||||||||||| || ||||| ||||||||||||||||| || ||||| || || || | || |||||| || || ||||||||||||| ||||| |
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| T |
25355778 |
tgtacatttagaatttgtgatggacgagatcctccgatccaaagaaaaaggcgttcgaccggtgatttccatacgccagagattaaatagaaaacatcag |
25355877 |
T |
|
| Q |
567 |
cctttgcagcatccgttttcattctgaaaagatccgagtaatgattcaagacactctgaacaactagacggagctgcacttcggacgcattagtttgaaa |
666 |
Q |
| |
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|||||||||| || | ||||||||||||||||| ||||| || |||||| ||||| ||||| |||| | || || | || || ||||||||||| || |
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| T |
25355878 |
cctttgcagcttcagctttcattctgaaaagatttgagtattggttcaagctactctcaacaagtagatgaagttgtatatcagatgcattagtttgcaa |
25355977 |
T |
|
| Q |
667 |
tgcatttct |
675 |
Q |
| |
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||||||||| |
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|
| T |
25355978 |
tgcatttct |
25355986 |
T |
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