View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10235_high_2 (Length: 289)
Name: NF10235_high_2
Description: NF10235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10235_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 36746142 - 36745861
Alignment:
| Q |
1 |
tcatcagaagcatgccttgacaatatctctatcaccgtaaggtcgatgagagcctcggtctttggtgtgattgttctcaaataagccctttggtcatctt |
100 |
Q |
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| T |
36746142 |
tcatcagaagcatgccttgacaatatctctatcaccgtaaggtcaatgagagcctcggtctttggtgtgattgttctcaaataagccctttggtcatctt |
36746043 |
T |
|
| Q |
101 |
tctccatctcttcatattctttggttcccttttcaggaattaacctccttgtcatagttggtcggttcaagattaaaccaccgtaaggatattgtccgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746042 |
tctccatctcttcatattctttggttcccttttcaggaattaacctccttgtcatagttggtcggttcaagattaaaccaccgtaaggatattgtccgaa |
36745943 |
T |
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| Q |
201 |
attgacagctgcgtggaaagcggatgcaagccatatgattattgagcaggattccaccaactcgttaatcgaattcatctca |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36745942 |
attgacagctgcgtggaaagcggatgcaagccatatgattattgagcaggattccaccaactcgttaatcgaattcatctca |
36745861 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 42689866 - 42689650
Alignment:
| Q |
1 |
tcatcagaagcatgccttgacaatatctctatcaccgtaaggtcgatgagagcctcggtctttggtgtgattgttctcaaataagccctttggtcatctt |
100 |
Q |
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|||||||||||||| ||||||||||| |||||||| | |||||| || |||| || ||| || |||||||||||||| |||||| |||| | | |
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| T |
42689866 |
tcatcagaagcatgtcttgacaatatttctatcactgaaaggtcaataagagtctgaaacttcggcgtgattgttctcaagtaagccttttgaggactct |
42689767 |
T |
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| Q |
101 |
tctccatctcttcatattctttggttcccttttcaggaattaacctccttgtcatagttggtcggttcaagattaaaccaccgtaaggatattgtccgaa |
200 |
Q |
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| T |
42689766 |
tcaccatttcatcatattgtgcagttccttcctcaggaagtaatcttctactgatagttgggcggtttagaataaaaccgccgtaaggatattgtccaaa |
42689667 |
T |
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| Q |
201 |
attgacagctgcgtgga |
217 |
Q |
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||| ||||||||||||| |
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| T |
42689666 |
attaacagctgcgtgga |
42689650 |
T |
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