View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10235_high_3 (Length: 253)
Name: NF10235_high_3
Description: NF10235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10235_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 14060058 - 14060300
Alignment:
| Q |
1 |
aagtcgtagttctccactcaaccacttagacttgaaggaaacgttactccatgtccatgcatccaccttatttggtttcacgtgaattcctactattttt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |
|
|
| T |
14060058 |
aagtcttagttctccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattattttt |
14060157 |
T |
|
| Q |
101 |
agatcccttatgcttttatatgtattccaattacaactaagaacttcttca---tcatcatcttcttggtttaaggttgtatttcccccagtttgattgg |
197 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
14060158 |
agatcccttatgcttttataagtattccaattacaactaagaacttcttcatcgtcatcatcttcttggtttaaggttgtattttccccggtttgattgg |
14060257 |
T |
|
| Q |
198 |
gttcttttccttctgattgtgtttccatccgaccttgttcttc |
240 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14060258 |
gttcatttccttctgattgtgtttccatctgaccttgttcttc |
14060300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 14048687 - 14048929
Alignment:
| Q |
1 |
aagtcgtagttctccactcaaccacttagacttgaaggaaacgttactccatgtccatgcatccaccttatttggtttcacgtgaattcctactattttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
14048687 |
aagtcgtagttctccactcaaccacttagacttgaaggaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctaccattttt |
14048786 |
T |
|
| Q |
101 |
agatcccttatgcttttatatgtattccaattacaactaagaacttct---tcatcatcatcttcttggtttaaggttgtatttcccccagtttgattgg |
197 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
14048787 |
agatcccttatgcttttataagtattccattaacaactaagaacttcttcatcatcatcatcttcttggtttaaggttgtattttcccctgtttgattgg |
14048886 |
T |
|
| Q |
198 |
gttcttttccttctgattgtgtttccatccgaccttgttcttc |
240 |
Q |
| |
|
|||| ||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
14048887 |
gttcatttccttctgaatgtgtttccatctgaccttgttcttc |
14048929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 15900396 - 15900271
Alignment:
| Q |
7 |
tagttctccactcaaccacttagacttgaaggaaacgttactccatgtccatgcatccaccttatttggtttcacgtgaattcctactatttttagatcc |
106 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||| |||| ||||||||| ||||| ||| |||||||| | ||| |||||||||||| ||||||||||| |
|
|
| T |
15900396 |
tagttcgccactaaaccatttagacttgaaagaaatgttactccaggtccacttatctgtcttatttgctaccacttgaattcctactgtttttagatcc |
15900297 |
T |
|
| Q |
107 |
cttatgcttttatatgtattccaatt |
132 |
Q |
| |
|
| |||||| ||||| ||||||||||| |
|
|
| T |
15900296 |
cgtatgctcttataagtattccaatt |
15900271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 15921443 - 15921286
Alignment:
| Q |
10 |
ttctccactcaaccacttagacttgaaggaaacgttactccatgtccatgcatccaccttatttggtttcacgtgaattcctactatttttagatccctt |
109 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||| ||||||||| |||| |||| |||||||| | ||| ||||||||||| |||||||||||| | |
|
|
| T |
15921443 |
ttctccactaaaccatttagacttgaacgaaatgttactccagttccactcatctgtcttatttgctaccactcgaattcctactgtttttagatcccgt |
15921344 |
T |
|
| Q |
110 |
atgcttttatatgtattccaattacaactaagaacttcttcatcatcatcttcttggt |
167 |
Q |
| |
|
||||| ||||| |||||||||||| || ||| | |||| |||||| |||||||||| |
|
|
| T |
15921343 |
atgctcttataagtattccaattaaaattaatatcttcctcatcactgtcttcttggt |
15921286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 15873651 - 15873776
Alignment:
| Q |
7 |
tagttctccactcaaccacttagacttgaaggaaacgttactccatgtccatgcatccaccttatttggtttcacgtgaattcctactatttttagatcc |
106 |
Q |
| |
|
|||||||||| | ||||| |||||| |||| |||| ||||||||| |||| |||| |||||||| | ||| |||||||||||| | ||||||||| |
|
|
| T |
15873651 |
tagttctccattaaaccatttagacgtgaacgaaatgttactccagttccactcatctgtcttatttgctaccacttgaattcctactgtctttagatcc |
15873750 |
T |
|
| Q |
107 |
cttatgcttttatatgtattccaatt |
132 |
Q |
| |
|
| |||||| ||||| ||||||||||| |
|
|
| T |
15873751 |
cgtatgctcttataagtattccaatt |
15873776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University