View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10235_high_6 (Length: 240)
Name: NF10235_high_6
Description: NF10235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10235_high_6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 3879680 - 3879452
Alignment:
| Q |
12 |
acagagcagtcagacacttgtatagaagaaagcgatatagccctcaagttcaaatctgctaatctgcaaaggaaaccattcnnnnnnntaaattaggcgc |
111 |
Q |
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| T |
3879680 |
acagagcagtcagacacttgtatagaagaaagcgatatagccctcaagttcaaatctgctaatctgcaaaggaaaccattcaaaaaaataaattaggcgc |
3879581 |
T |
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| Q |
112 |
aacaatagaaaaaaggatttggtattgacttaaacagaaagtgaaaagcaatagagagagacggatcaataatagaattatagtgcttttctggggagag |
211 |
Q |
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| T |
3879580 |
aacaatagaaaaaaggatttggtattgacttaaacagaaagtgaaaagcaatagagagagacggatcaataatagaattatagtgcttttctggggagag |
3879481 |
T |
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| Q |
212 |
agaaaatgaagcagaaacatacttgcgac |
240 |
Q |
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| T |
3879480 |
agaaaatgaagcagaaacatacttgcgac |
3879452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 3865694 - 3865609
Alignment:
| Q |
7 |
ggagcacagagcagtcagacacttgtatagaagaaagcgatatagccctcaagttcaaatctgctaatctgcaaaggaaaccattc |
92 |
Q |
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| T |
3865694 |
ggagtacagagcagttagacacttgtatagaagaaagcgatatagctctcaaattcaaatctgctaatctgccaaggaaaccattc |
3865609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 3865513 - 3865470
Alignment:
| Q |
197 |
cttttctggggagagagaaaatgaagcagaaacatacttgcgac |
240 |
Q |
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| T |
3865513 |
cttttctggggagagagaaaatgaagcagaaacatacttgcgac |
3865470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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