View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10235_high_8 (Length: 230)
Name: NF10235_high_8
Description: NF10235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10235_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9452786 - 9453010
Alignment:
| Q |
1 |
cattttccaaaataaatggatcaaaatcacgacacaatttcttcaaatcgcatcaagatttttgacgaaccttcaacatcaatttgagtaagttttcaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9452786 |
cattttccaaaataaatggatcaaaatcacgacacaatttcttcaaatcgcatcaagatttttgacgaaccttcaacatcaatttgagtaacttttcaac |
9452885 |
T |
|
| Q |
101 |
agcagctcaatgagtatgaaaatgctaagttaacaaagcaataattctaggaattttctcaacaattttcattaattttacatgttgtttaatatggtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9452886 |
agcagctcaatgagtatgaaaatgctaagttaacaaagcaataattctaggaattttctcaacaattttcattaattttacatgttgtttgatatggtta |
9452985 |
T |
|
| Q |
201 |
tctgaatgtataatcctatgtttct |
225 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
9452986 |
tctgaatgtataatcctatggttct |
9453010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 9431806 - 9432023
Alignment:
| Q |
10 |
aaataaatggatcaaaatcacgacacaatttcttcaaatcgcatcaagatttttgacgaaccttcaacatcaattt-gagtaagttttcaacagcagctc |
108 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||| || || |||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
9431806 |
aaataaatggatcaaaatcacgacacgatttctccaaatcgcaccatgaattttgacgaaccttcaacatcaattttgagtaaattttcaacagcagctc |
9431905 |
T |
|
| Q |
109 |
aatgagtatgaaaatgctaagttaacaaagcaataattctaggaattttctcaacaattttcattaattttacatgtt-gtttaatatggttatctgaat |
207 |
Q |
| |
|
|||||||| | ||||||||||||||||||| | ||||||||||||||||| | |||||||||||||||||||||| || |||| || ||||||||||||| |
|
|
| T |
9431906 |
aatgagtaagtaaatgctaagttaacaaagaagtaattctaggaattttcgctacaattttcattaattttacattttagtttcatctggttatctgaat |
9432005 |
T |
|
| Q |
208 |
gtataatcctatgtttct |
225 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
9432006 |
ctataatcctatggttct |
9432023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University