View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10235_low_2 (Length: 362)
Name: NF10235_low_2
Description: NF10235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10235_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 28785752 - 28786106
Alignment:
| Q |
1 |
tcaatccctgaacaaacacataattcagtcaatacattgtgatctgaagtaagagaaagggtcattagtatttaatacagtagtcttaaatgataaaaac |
100 |
Q |
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| T |
28785752 |
tcaatccctgaacaaacacataattcagtcaatacattgtgatctgaagtaagagaaagggtcattagtatttaatacagtagtcttaaatgataaaaac |
28785851 |
T |
|
| Q |
101 |
ctttggcagaatcttcggcaatctcaagtcgcttaatccaattgatactttgtccacgcgttaatggccctgaaagaagttaggcacaagaaaacataat |
200 |
Q |
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| T |
28785852 |
ctttggcagaatcttcggcaatctcgagtcgcttaatccaattgatactttgtccacgcgttaatggccctgaaagaagttaggcacaagaaaacataat |
28785951 |
T |
|
| Q |
201 |
taagcatatggaaactcattattgctacttgatttaaatcatgcaggcttactataaagatgttccttgagagttccattatgcatgaactcataaataa |
300 |
Q |
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| T |
28785952 |
taagcatatggaaactcattattgctacttgatttaaatcatgcaggcttactataaagatgttccttgagagttccattatgcatgaactcataaataa |
28786051 |
T |
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| Q |
301 |
gtatactattcccttcttctcgacaataacctagaagctgtaccaagtttctgtg |
355 |
Q |
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| T |
28786052 |
gtatactattcccttcttctcgacaataacctagaagctgtaccaagtttctgtg |
28786106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 231 - 355
Target Start/End: Original strand, 22129165 - 22129289
Alignment:
| Q |
231 |
gatttaaatcatgcaggcttactataaagatgttccttgagagttccattatgcatgaactcataaataagtatactattcccttcttctcgacaataac |
330 |
Q |
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| T |
22129165 |
gatttaaatcatgcaggcttaccataaagatgttccttgagagtgccattatgcatgaactcatacacaagaatactattctcttcttctcggcaatacc |
22129264 |
T |
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| Q |
331 |
ctagaagctgtaccaagtttctgtg |
355 |
Q |
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| T |
22129265 |
caataagttgtaccaagtttctgtg |
22129289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 40533756 - 40533632
Alignment:
| Q |
231 |
gatttaaatcatgcaggcttactataaagatgttccttgagagttccattatgcatgaactcataaataagtatactattcccttcttctcgacaataac |
330 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||| |||||||||| ||||| | |
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| T |
40533756 |
gatttaaatcatgcaggcttaccataaagatgttccttgagagtgccattatgcatgaactcatacacaagaatactattctcttcttctcggcaatacc |
40533657 |
T |
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| Q |
331 |
ctagaagctgtaccaagtttctgtg |
355 |
Q |
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| | ||| ||||||||||||||||| |
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| T |
40533656 |
caataagttgtaccaagtttctgtg |
40533632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 22129040 - 22129092
Alignment:
| Q |
97 |
aaacctttggcagaatcttcggcaatctcaagtcgcttaatccaattgatact |
149 |
Q |
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||||||||||||| |||||| || |||||||| || ||||||||||||||||| |
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| T |
22129040 |
aaacctttggcagcatcttctgcgatctcaagacgtttaatccaattgatact |
22129092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 40533881 - 40533829
Alignment:
| Q |
97 |
aaacctttggcagaatcttcggcaatctcaagtcgcttaatccaattgatact |
149 |
Q |
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||||||||||||| |||||| || |||||||| || ||||||||||||||||| |
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| T |
40533881 |
aaacctttggcagcatcttctgcgatctcaagacgtttaatccaattgatact |
40533829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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