View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10235_low_9 (Length: 230)
Name: NF10235_low_9
Description: NF10235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10235_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 4846459 - 4846300
Alignment:
| Q |
19 |
agcaagagacatgaaactccaaccacagcaaccatgagcgtggttgacttctttgactttgatcggtgttttggagatgttggtataatcatgggtttgt |
118 |
Q |
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| T |
4846459 |
agcaagagacatgaaactccaaccacagcaaccatgaacgtggttgacttctttgactttgatcggtgttttggagatgttggtataatcatgggtttgt |
4846360 |
T |
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| Q |
119 |
tgggattcataccagccagattattttcatcacttattttgaaaatctcgactccattca |
178 |
Q |
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| T |
4846359 |
tgggattcataccagccagattgtttttatcacttactttgaaaatctcgattccattca |
4846300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 4712519 - 4712353
Alignment:
| Q |
19 |
agcaagagacatgaaactccaaccacagcaaccatgagcgtggttgacttctttgactttgatcggtgttttggagatgttggtataatcatgggtttgt |
118 |
Q |
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| T |
4712519 |
agcaagagacatgataatccaaccaaagcaaacatgactatgggtgatttcttcgacttcgatcgtcgatttggagatgatggtataat---gtgtttga |
4712423 |
T |
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| Q |
119 |
tgggattcataccagccagattattttcatcacttattttgaaaatctcgactccattcagtaagacatc |
188 |
Q |
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| T |
4712422 |
tgggattcaaaccagcgagattatttttatcacttattttgaaaatctcaattccattcattatgacatc |
4712353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 4630692 - 4630744
Alignment:
| Q |
136 |
agattattttcatcacttattttgaaaatctcgactccattcagtaagacatc |
188 |
Q |
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| T |
4630692 |
agattagttttatcacttattttgaaaatctcaattccattcagcaggacatc |
4630744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 4636602 - 4636668
Alignment:
| Q |
113 |
gtttgttgggattcataccagccagattatt---ttcatcacttattttgaaaatctcgactccatt |
176 |
Q |
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| T |
4636602 |
gtttgttgggattcaaaccagcgagattgttatatttatcactaattttgaaaatctcgattccatt |
4636668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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