View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10236_high_14 (Length: 260)
Name: NF10236_high_14
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10236_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 32580054 - 32580292
Alignment:
| Q |
18 |
cttgtaaagttaagcaacgtacaaatcaatatatttt-attagttctactaagaaagaaagatcatttttaaaaaatgtttgcgcttacaatcttgattg |
116 |
Q |
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| T |
32580054 |
cttgtaaagtcaagcaacatacaaatcaatatatttttattagttctactaagaaagaaagattatttttaaaaaatgtttacgcttacaatcttggttg |
32580153 |
T |
|
| Q |
117 |
cgacatcaagcttatgatcctttgtaatcc-taattagatcatgcaattgaagttgcatcaaccacatttgaccgcaattgtctataccattcaagcttc |
215 |
Q |
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|||||||||| ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32580154 |
cgacatcaagtttatgatcctttgtaatccctaatgaaatcatgcaattgaagttgcatcaaccacatttgaccgcaattgtctataccattcaagcttc |
32580253 |
T |
|
| Q |
216 |
ttttcttctactatgtttaagagcttcttttcttctcac |
254 |
Q |
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| T |
32580254 |
ttttcttctactatgtttaagagcttcttttcttttcac |
32580292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 32609932 - 32609972
Alignment:
| Q |
162 |
attgaagttgcatcaaccacatttgaccgcaattgtctata |
202 |
Q |
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| T |
32609932 |
attgaagttgcatcaaccacatttgactgcaattctctata |
32609972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 32629649 - 32629688
Alignment:
| Q |
209 |
aagcttcttttcttctactatgtttaagagcttcttttct |
248 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |
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| T |
32629649 |
aagcttcttttcttctactacatttaagagcttcttttct |
32629688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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