View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10236_high_16 (Length: 248)

Name: NF10236_high_16
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10236_high_16
NF10236_high_16
[»] chr2 (3 HSPs)
chr2 (8-248)||(38968830-38969070)
chr2 (84-248)||(16078255-16078419)
chr2 (174-246)||(44690946-44691018)
[»] chr5 (4 HSPs)
chr5 (8-247)||(3680325-3680564)
chr5 (129-238)||(29299605-29299714)
chr5 (146-210)||(15194927-15194991)
chr5 (187-238)||(16648482-16648533)
[»] chr7 (1 HSPs)
chr7 (12-244)||(6229977-6230209)
[»] chr4 (5 HSPs)
chr4 (11-248)||(55351320-55351557)
chr4 (131-211)||(29080975-29081055)
chr4 (179-241)||(8506535-8506597)
chr4 (176-220)||(13852276-13852320)
chr4 (187-239)||(47551280-47551332)
[»] chr8 (4 HSPs)
chr8 (8-244)||(44682266-44682500)
chr8 (138-237)||(25659788-25659887)
chr8 (158-211)||(29577065-29577118)
chr8 (177-238)||(4901693-4901754)
[»] chr1 (2 HSPs)
chr1 (129-240)||(23295255-23295366)
chr1 (177-241)||(40197970-40198034)
[»] chr3 (1 HSPs)
chr3 (131-211)||(48721356-48721436)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 38969070 - 38968830
Alignment:
Q  8 agatgaaataatagagctcataacttttgacattctaccggccaacactttagcaagaagtttgtaaaggcatcctaagagggaaataggacgaaactcc 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38969070 agatgaaataatagagctcataaattttgacattctaccggccaacactttagcaagaagtttgtaaaggcatcctaagcgggaaataggacgaaactcc 38968971  T
Q  108 ttcaaagtgaaaggatttttaacctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataa 207  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38968970 ttcaaaatgaaaggatttttaatctttgggattaaagtaacaaaataggacaaaaaactcctcggcaccacctcattaccatggaattgatcaaacataa 38968871  T
Q  208 ttctcacttcatgcttgattagataccaaaattctttaata 248  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  38968870 ttctcacttcatgcttgattagatacaaaaattctttaata 38968830  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 248
Target Start/End: Complemental strand, 16078419 - 16078255
Alignment:
Q  84 aagagggaaataggacgaaactccttcaaagtgaaaggatttttaacctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcat 183  Q
    ||||| |||||||| || |||||||||||||| || || ||    | ||||||||| || ||||||||||| |  |  |||||||| ||||  || ||||    
T  16078419 aagagtgaaataggtcggaactccttcaaagtaaatgggttacgcatctttgggatcaatgtaacaaaatacggtaggaaactcctaggcaaaacttcat 16078320  T
Q  184 taccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaata 248  Q
    |  |||| |||||||||||||| ||||| |||||||  || || |||||||||||||| ||||||    
T  16078319 tttcatgaaattgatcaaacatgattctaacttcatttttaataagataccaaaattccttaata 16078255  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 44691018 - 44690946
Alignment:
Q  174 accacctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaa 246  Q
    |||||||||||| ||| ||||||||| ||||| || || || |||| |||||| | |||||||||||||||||    
T  44691018 accacctcattagcatagaattgatcgaacattatcctaacctcatccttgatcaaataccaaaattctttaa 44690946  T

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Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 3680325 - 3680564
Alignment:
Q  8 agatgaaataatagagctcataacttttgacattctaccggccaacactttagcaagaagtttgtaaaggcatcctaagagggaaataggacgaaactcc 107  Q
    |||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  3680325 agatgaaataattgtactcataagttttgacattctaccggccaacactttagcaagaagtttataaaggcatcctaaaagggaaataggacgaaactcc 3680424  T
Q  108 ttcaaagtgaaaggatttttaacctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataa 207  Q
    |||||||| || ||||| ||||| || ||||||||||||||||||||||| || || |||||||| ||||||||||||||||||||||| ||||||||||    
T  3680425 ttcaaagtaaacggattattaactttagggattaaagtaacaaaataggataaaaagctcctcggaaccacctcattaccatggaattggtcaaacataa 3680524  T
Q  208 ttctcacttcatgcttgattagataccaaaattctttaat 247  Q
    |||||| ||| |||||||| ||||||||||| ||||||||    
T  3680525 ttctcatttcgtgcttgataagataccaaaactctttaat 3680564  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 238
Target Start/End: Complemental strand, 29299714 - 29299605
Alignment:
Q  129 acctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattctcacttcatgcttgatta 228  Q
    ||||||||||| ||||  |||||||| |  || ||||| || ||||||||||||||| |||| ||||||||||||||||| ||||| |||| ||| ||||    
T  29299714 acctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcatta 29299615  T
Q  229 gataccaaaa 238  Q
      ||||||||    
T  29299614 agtaccaaaa 29299605  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 15194927 - 15194991
Alignment:
Q  146 aacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattc 210  Q
    ||||||||| | ||||||||||||||| ||||| |||||| |||| ||||| || ||||||||||    
T  15194927 aacaaaatatgccaacaaactcctcgggaccacttcattagcatgaaattggtcgaacataattc 15194991  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 16648533 - 16648482
Alignment:
Q  187 catggaattgatcaaacataattctcacttcatgcttgattagataccaaaa 238  Q
    |||||||||||||||||||||| |||||||||| ||| || | |||||||||    
T  16648533 catggaattgatcaaacataatcctcacttcattctttatcaaataccaaaa 16648482  T

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Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 6230209 - 6229977
Alignment:
Q  12 gaaataatagagctcataacttttgacattctaccggccaacactttagcaagaagtttgtaaaggcatcctaagagggaaataggacgaaactccttca 111  Q
    ||||||||||| ||||| ||||| |||| |||| |||||||||||||||||||||||||||| |  |||||||| |||||||| ||||||||||||||||    
T  6230209 gaaataatagaactcatcactttagacaatctatcggccaacactttagcaagaagtttgtataaacatcctaaaagggaaatcggacgaaactccttca 6230110  T
Q  112 aagtgaaaggatttttaacctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattct 211  Q
    |||| |||||||| || |||||||| || | ||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6230109 aagtaaaaggattgttgacctttggtataagagtaacaaagtaggacaaaaaactcttcggcaccacctcattaccatggaattgatcaaacataattct 6230010  T
Q  212 cacttcatgcttgattagataccaaaattcttt 244  Q
    |||||||||||| ||||||||||||||||||||    
T  6230009 cacttcatgcttaattagataccaaaattcttt 6229977  T

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Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 55351557 - 55351320
Alignment:
Q  11 tgaaataatagagctcataacttttgacattctaccggccaacactttagcaagaagtttgtaaaggcatcctaagagggaaataggacgaaactccttc 110  Q
    ||||||||||||  |||| || ||||| |  | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  55351557 tgaaataatagaattcatgacctttgataaacgacctgccaacactttagcaagaagtttgtaaaggcaccctaagagggaaataggacgaaactccttc 55351458  T
Q  111 aaagtgaaaggatttttaacctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattc 210  Q
    |||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||||||| ||| |  ||||||  ||| |||||| |||||||||||||    
T  55351457 aaagtgaaaggattgtttaccttagggattaaagtaacaaaataagacaaaaaactcctcagcaacttctcattcgcatagaattggtcaaacataattc 55351358  T
Q  211 tcacttcatgcttgattagataccaaaattctttaata 248  Q
    |||||||||||||||| || | ||||||||||||||||    
T  55351357 tcacttcatgcttgataaggtgccaaaattctttaata 55351320  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 29081055 - 29080975
Alignment:
Q  131 ctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattct 211  Q
    ||||||||||||||  |||||||| | |||||||||  | || |||||||||||| |||| |||||||| ||||| |||||    
T  29081055 ctttgggattaaagccacaaaatatgccaacaaactttttggtaccacctcattagcatgaaattgatcgaacattattct 29080975  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 8506535 - 8506597
Alignment:
Q  179 ctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattc 241  Q
    ||||||| |||||||||| || |||||||||||||| |||| |||||| |  |||||||||||    
T  8506535 ctcattagcatggaattggtcgaacataattctcacctcatccttgatcaagtaccaaaattc 8506597  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 13852320 - 13852276
Alignment:
Q  176 cacctcattaccatggaattgatcaaacataattctcacttcatg 220  Q
    |||||||||| |||| |||||||||||||| ||||| ||||||||    
T  13852320 cacctcattagcatgaaattgatcaaacatgattcttacttcatg 13852276  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 47551280 - 47551332
Alignment:
Q  187 catggaattgatcaaacataattctcacttcatgcttgattagataccaaaat 239  Q
    ||||||||||||| |||||||||||||| |||| ||| || | ||||||||||    
T  47551280 catggaattgatcgaacataattctcacctcatccttcatcaaataccaaaat 47551332  T

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Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 44682500 - 44682266
Alignment:
Q  8 agatgaaataatagagctcataacttttgacattctaccggccaacactttagcaagaagtttgtaaaggcatcctaagagggaaataggacgaaactcc 107  Q
    |||||| ||||| ||||||||||| ||||  |  || || ||||||||||  |||||||||||||| || |||||||||||||| || ||| || |||||    
T  44682500 agatgagataatggagctcataacctttgctagccttcccgccaacactt--gcaagaagtttgtagagacatcctaagagggatatgggatgatactcc 44682403  T
Q  108 ttcaaagtgaaaggatttttaacctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataa 207  Q
    ||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  |||| |||||||||||||| |    
T  44682402 ttcaaagtgaaaggattattgacctttggaattaaagtaacaaaataggacaagaaactcctcggcaccacctcatttgcatgaaattgatcaaacatga 44682303  T
Q  208 ttctcacttcatgcttgattagataccaaaattcttt 244  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  44682302 ttctcacatcatgcttgataagataccaaaattcttt 44682266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 25659887 - 25659788
Alignment:
Q  138 attaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaa 237  Q
    |||||||| |||||||| | ||||| ||  ||||||| |||||||||| |||| ||||| ||||||| ||||||||||||||  || |||| ||||||||    
T  25659887 attaaagtcacaaaataagccaacatacctctcggcaacacctcattagcatgaaattggtcaaacaaaattctcacttcatctttaattaaataccaaa 25659788  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 29577065 - 29577118
Alignment:
Q  158 caacaaactcctcggcaccacctcattaccatggaattgatcaaacataattct 211  Q
    |||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||    
T  29577065 caacaaactcttcggcacaacctcattagcatggaattgatgaaacataattct 29577118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 4901754 - 4901693
Alignment:
Q  177 acctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaa 238  Q
    ||||||||| | || |||||||||||||||||||| ||||||| ||| || | |||||||||    
T  4901754 acctcattagcgtgaaattgatcaaacataattctaacttcatcctttatcaaataccaaaa 4901693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 240
Target Start/End: Original strand, 23295255 - 23295366
Alignment:
Q  129 acctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattctcacttcatgcttgatta 228  Q
    |||||||| || || || ||||| || |||||||||||||| || | ||| ||||||||||||||||||||||| | ||||||||| |||| ||| || |    
T  23295255 acctttggaatcaacgtcacaaagtaagacaacaaactcctagggaacacttcattaccatggaattgatcaaagaaaattctcacctcattcttaatga 23295354  T
Q  229 gataccaaaatt 240  Q
    ||||||||||||    
T  23295355 gataccaaaatt 23295366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 40197970 - 40198034
Alignment:
Q  177 acctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattc 241  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||  ||||| |  |||||||||||    
T  40197970 acctcattaccatgaaattggtcaaacataattctcacctcatctttgatcaagtaccaaaattc 40198034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 48721436 - 48721356
Alignment:
Q  131 ctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattct 211  Q
    |||||| |||||||  ||||| || | |||||| ||  ||||||||||||||||| |||| ||||||||||||||||||||    
T  48721436 ctttggaattaaagccacaaagtatgccaacaagcttttcggcaccacctcattagcatgaaattgatcaaacataattct 48721356  T

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