View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10236_high_19 (Length: 229)
Name: NF10236_high_19
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10236_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 38966403 - 38966259
Alignment:
| Q |
79 |
aattcctattttcaccttccgaaaatttaccaaactnnnnnnnatctaacattggcctttcccaatgagaagttgcaacttgccttttaaagtactccac |
178 |
Q |
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| T |
38966403 |
aatttctattttcaccttccgaaagtttaccaagctccaccccatctaaccttggcctttcccaatgagaagttgccacttgccttttaaagtactccac |
38966304 |
T |
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| Q |
179 |
tacctcccctctaaccgcctccggagtttgcacccaacctccttc |
223 |
Q |
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| T |
38966303 |
tacctcccctctaaccgcctccggagtttgcacccaacctccttc |
38966259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 38968796 - 38968732
Alignment:
| Q |
18 |
ttgttaccatggctatctttgactaccttctctatttcctccatcgaaaaaggagcaatcaaatt |
82 |
Q |
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| T |
38968796 |
ttgttaccatcgctatctttgactaccttttctatttcctccatcgaaaaaggtgcaatccaatt |
38968732 |
T |
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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 3680596 - 3680804
Alignment:
| Q |
15 |
ctcttgttaccatggctatctttgactaccttctctatttcctccatcgaaaaaggagcaatcaaattcctattttcaccttccgaaaatttaccaaact |
114 |
Q |
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| T |
3680596 |
ctcttgttaccatcactctctttgacaaccttatcaatttcctccatcgagaatggtgcaatcaagttcaaattttcaccttccgaaagcataccaaact |
3680695 |
T |
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| Q |
115 |
nnnnnnnatctaacattggcctttcccaatgagaagttgcaacttgccttttaaagtactccactacctcccctctaaccgcctccggagtttgcaccca |
214 |
Q |
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| T |
3680696 |
ccaccccatctagccttggtctttcccaatgtgaagttgccacttgccttttgaaatactccaccaccgctcctctaaccccctccggagtttgcaccca |
3680795 |
T |
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| Q |
215 |
acctccttc |
223 |
Q |
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|||||||| |
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| T |
3680796 |
tcctccttc |
3680804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 6229818 - 6229734
Alignment:
| Q |
139 |
cccaatgagaagttgcaacttgccttttaaagtactccactacctcccctctaaccgcctccggagtttgcacccaacctccttc |
223 |
Q |
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| T |
6229818 |
cccaataagaagttgccacttgtcttttaaaatactccaccacctctcttctaacctcctccggagtttgcacccaacctccttc |
6229734 |
T |
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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 44682203 - 44682025
Alignment:
| Q |
42 |
accttctctatttcctccatcgaaaaaggagcaatcaaattcctattttcaccttccgaaaatttaccaaactnnnnnnnatctaacattggcctttccc |
141 |
Q |
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| T |
44682203 |
accttttcaatttcctccatagagaaaggggcaatcaaatccctattttcaccatccgagagaatttcaaacgccaccccatctaacctcggtctttccc |
44682104 |
T |
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| Q |
142 |
aatgagaagttgcaacttgccttttaaagtactccactacctcccctctaaccgcctccggagtttgcacccaacctcc |
220 |
Q |
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| T |
44682103 |
aataagtagttgtcacttgcctttcaaaatactccaccaccgcctctctaacctcctccggagtttgcacccaacctcc |
44682025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 55351283 - 55351084
Alignment:
| Q |
21 |
ttaccatggctatctttgactaccttctctatttcctccatcgaaaaaggagcaatcaaattcctattttcaccttccgaaaatttaccaaactnnnnnn |
120 |
Q |
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||||||| ||||||||||| ||||| || |||||||||| || ||| ||||||||||| |||||| ||| ||||||||| || |||| |
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| T |
55351283 |
ttaccatcactatctttgacaaccttttcaatttcctccaacgtaaacggagcaatcaagcccctattatcatcttccgaaagcatatcaaaagccaccc |
55351184 |
T |
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| Q |
121 |
natctaacattggcctttcccaatgagaagttgcaacttgccttttaaagtactccactacctcccctctaaccgcctccggagtttgcacccaacctcc |
220 |
Q |
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| T |
55351183 |
catctaactttggtctttcccagtgagtagttgccacttgccttccaaaatactccactacggcacctctaatctcttccggagtttgaacccaacctcc |
55351084 |
T |
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