View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10236_high_9 (Length: 313)
Name: NF10236_high_9
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10236_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 53732014 - 53732147
Alignment:
| Q |
156 |
gatgtgtaaggtgttgccgtcatctgccgccaccgtccctctccttgctgtcatctttgcctccctccacctctctctaagagctccccaaatgnnnnnn |
255 |
Q |
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| T |
53732014 |
gatgtgtaaggtgttgccgtcatctgccaccaccgtccttctccttgctgtcgtctttgcctccctccacctctctcttagatctacccaaatgaagaaa |
53732113 |
T |
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| Q |
256 |
nntatatataatgcggagggattatagtaagatc |
289 |
Q |
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| T |
53732114 |
aaaaaatatagtgcggagggattatagtaagatc |
53732147 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 53731868 - 53731959
Alignment:
| Q |
18 |
cactataaagcttaagggttaatttaattgttctccatta-------gtgagaagagcaacaacaacagttgctacagtaccagcatacaaa |
102 |
Q |
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| T |
53731868 |
cactataaagcttaagggttaatttagttgttctccgttaaattacagtgagaagagcagcaacaacagttgctacagtaccagcatacaaa |
53731959 |
T |
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