View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10236_low_10 (Length: 341)
Name: NF10236_low_10
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10236_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 49168934 - 49168625
Alignment:
| Q |
16 |
atgaacgagttaaaggccaacatctcttccattcttttaaaatcaccagttcctttcctctctaaagatgttccgatggatttgaaatcgctgatttcac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49168934 |
atgaacgagttaaaggccaacatctcttccattcttttaaaatcaccagttcctttcctctctaaagatgttccgatggatttgaaatcgctgagttcac |
49168835 |
T |
|
| Q |
116 |
accatttttcccctggtttcaacaatattaaatctttcaacttatcccacagatcttttcctccccgccttacaaggtgcatatacatttactatagaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49168834 |
accatttttcccctggtttcaacaatattaaatctttcaacttatcccacagatcttttcctccccgccttacaaggtgcatatacatttactatagaaa |
49168735 |
T |
|
| Q |
216 |
ctggagtttcctcttgtccccacaatccatccaagcaaataaaatgatcccctctagcctcacattgtaattttaaatttttataattccaaatcaccaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49168734 |
ctggagtttcctcttgtccccacaatccatccaagcaaataaaatgatcccctctagcctcacattgtaattttaaatttttataattccaaatcactaa |
49168635 |
T |
|
| Q |
316 |
tagtcctcct |
325 |
Q |
| |
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|||||||||| |
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| T |
49168634 |
tagtcctcct |
49168625 |
T |
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