View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10236_low_11 (Length: 341)

Name: NF10236_low_11
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10236_low_11
NF10236_low_11
[»] chr8 (8 HSPs)
chr8 (7-341)||(44311895-44312225)
chr8 (193-341)||(43895799-43895942)
chr8 (193-273)||(44306223-44306305)
chr8 (300-337)||(44301285-44301322)
chr8 (301-341)||(44306353-44306393)
chr8 (39-98)||(44300979-44301041)
chr8 (227-273)||(44305733-44305779)
chr8 (196-225)||(44301201-44301230)
[»] chr6 (1 HSPs)
chr6 (212-286)||(8159402-8159474)
[»] chr3 (1 HSPs)
chr3 (300-341)||(4084057-4084098)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 44311895 - 44312225
Alignment:
Q  7 aatacaaaacataataaactcgagcaatccatagcatgatgcggacattgcctagttaagtcattgcatatattatgattaaagtgcagttcggataaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44311895 aatacaaaacataataaactcgagcaatccatagcatgatgcggacattgcctagttaagtcattgcatatattatgattaaagtgcagttcggataaaa 44311994  T
Q  107 acaatatcagaattattaacaacaaataacnnnnnnnnnnnntgttattttgcctctgtaagttatcttaaaatccagttttgcttttaacatgacattt 206  Q
    ||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44311995 acaatatcagaattattaacaacaaataacaaaaaataaaaatgttattttgcctctgtaagttatcttaaaatccagttttgcttttaacatgacattt 44312094  T
Q  207 gcactaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaaaatgcagaacacaacnnnnnnnnngagagtaac 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||           |||||||    
T  44312095 gcactaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgtt--aaatgcagaacacaacaaaaaaaat--gagtaac 44312190  T
Q  307 tactaactaatcagagatcaataattaagcaacaa 341  Q
    |||||||||||||||||||||||||||||||||||    
T  44312191 tactaactaatcagagatcaataattaagcaacaa 44312225  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 193 - 341
Target Start/End: Original strand, 43895799 - 43895942
Alignment:
Q  193 ttaacatgacatttgcactaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaaaatgcagaacacaacnnnn 292  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| |||||||||||||||  ||||  |||||||||||||||         
T  43895799 ttaacatgacatttgcactaaatgttaaacttatgaatcacatagacaatcttgacggcagagataggatcaggtgtt--aaatgcagaacacaataaaa 43895896  T
Q  293 nnnnngagagtaactactaactaatcagagatcaataattaagcaacaa 341  Q
            |||||||||||| ||||||||||||||||||||||||||||    
T  43895897 aattt---agtaactactaaataatcagagatcaataattaagcaacaa 43895942  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 44306223 - 44306305
Alignment:
Q  193 ttaacatgacatttgcactaaatgttaaacttaagaatcaaatagataatcttgacagc--agagataggatcaactgttaaa 273  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||| |||||||    
T  44306223 ttaacatgacatttgcactaaatgttaaacttaagaatcacatagacaatcttgacagcagagagataggatcaagtgttaaa 44306305  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 44301285 - 44301322
Alignment:
Q  300 gagtaactactaactaatcagagatcaataattaagca 337  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44301285 gagtaactactaactaatcagagatcaataattaagca 44301322  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 44306353 - 44306393
Alignment:
Q  301 agtaactactaactaatcagagatcaataattaagcaacaa 341  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  44306353 agtaactactaaataatcagagatcaataattaagcaacaa 44306393  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 44300979 - 44301041
Alignment:
Q  39 agcatgatgcggacattgcctagttaagtcattgc--atatattatgat-taaagtgcagttc 98  Q
    ||||||||||||||| |||||| ||||||||||||  ||||||||||||  ||||||||||||    
T  44300979 agcatgatgcggacactgcctaattaagtcattgcagatatattatgataaaaagtgcagttc 44301041  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 44305733 - 44305779
Alignment:
Q  227 gaatcaaatagataatcttgacagcagagataggatcaactgttaaa 273  Q
    |||||| ||||||| |||||||||||||||| ||||||| |||||||    
T  44305733 gaatcacatagatattcttgacagcagagatgggatcaattgttaaa 44305779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 44301201 - 44301230
Alignment:
Q  196 acatgacatttgcactaaatgttaaactta 225  Q
    ||||||||||||||||||||||||||||||    
T  44301201 acatgacatttgcactaaatgttaaactta 44301230  T

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Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 8159474 - 8159402
Alignment:
Q  212 aaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaaaatgcagaacaca 286  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||  ||||||||||||||    
T  8159474 aaatgttaaacttaagaatcaaatagataatattgacaacagagataggatcaagtgtt--aaatgcagaacaca 8159402  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 4084057 - 4084098
Alignment:
Q  300 gagtaactactaactaatcagagatcaataattaagcaacaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4084057 gagtaactactaactaatcagagatcaataattaagcaacaa 4084098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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