View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10236_low_13 (Length: 318)

Name: NF10236_low_13
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10236_low_13
NF10236_low_13
[»] chr8 (2 HSPs)
chr8 (20-300)||(1417937-1418224)
chr8 (138-183)||(41217357-41217402)
[»] chr5 (2 HSPs)
chr5 (154-192)||(8215364-8215402)
chr5 (105-185)||(28296077-28296157)
[»] chr1 (1 HSPs)
chr1 (118-183)||(50391954-50392019)
[»] chr7 (2 HSPs)
chr7 (146-178)||(9820993-9821025)
chr7 (146-178)||(10722918-10722950)
[»] chr4 (2 HSPs)
chr4 (118-192)||(9539680-9539754)
chr4 (106-134)||(26473359-26473387)
[»] chr3 (1 HSPs)
chr3 (152-220)||(31108193-31108258)
[»] chr2 (1 HSPs)
chr2 (152-223)||(31022914-31022982)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 1417937 - 1418224
Alignment:
Q  20 gttttgataccacttgttggagagttagggggcacgggagaaacaactaacacaaatgctcaatggtctcaagagagtgagatgtcacatctccacttaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  1417937 gttttgataccacttgttggagagttagggggcacgggagaaacaactaacacaaatgctcaatgatctcaagagagtgagatgttacatctccacttaa 1418036  T
Q  120 aactttaagacatttgatatatgaatcaaatatcttatatatccaatattttactcattcatagacgatgtgatgatatttaatcactcacacttgaaac 219  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1418037 aactttaaaacatttgatatatgaatcaaatatcttatatatccaatattttactcattcatagacgatgtgatgatatttaatcactcacacttgaaac 1418136  T
Q  220 caatatatgtgcagtgagatttc-------atgcatcatgcatgtctttaaatatgctttatttcagctatttattttgttaggaata 300  Q
    ||||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1418137 caatatatgtgcattgagatttcatgcatgatgcatcatgcatgtctttaaatatgctttatttcagctatttattttgttaggaata 1418224  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 41217357 - 41217402
Alignment:
Q  138 atatgaatcaaatatcttatatatccaatattttactcattcatag 183  Q
    |||||||||| || |||||||||||||| |||| ||||||||||||    
T  41217357 atatgaatcacatctcttatatatccaacatttgactcattcatag 41217402  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 8215402 - 8215364
Alignment:
Q  154 ttatatatccaatattttactcattcatagacgatgtga 192  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  8215402 ttatatatccaacattttactcattcatagacgatgtga 8215364  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 28296077 - 28296157
Alignment:
Q  105 cacatctccacttaaaactttaagacatttgatatatgaatcaaatatcttatatatccaatattttactcattcatagac 185  Q
    |||||||||||  ||||| |||||| ||| | ||||||  |||  | ||||||| || |||||||||||||||||||||||    
T  28296077 cacatctccacccaaaaccttaagagattaggtatatgggtcacctctcttatacattcaatattttactcattcatagac 28296157  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 50391954 - 50392019
Alignment:
Q  118 aaaactttaagacatttgatatatgaatcaaatatcttatatatccaatattttactcattcatag 183  Q
    ||||| |||||||||| | ||||||| ||| ||||||||||||||||| ||||||| |||| ||||    
T  50391954 aaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatag 50392019  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 9820993 - 9821025
Alignment:
Q  146 caaatatcttatatatccaatattttactcatt 178  Q
    |||||||||||||||||||||||||||||||||    
T  9820993 caaatatcttatatatccaatattttactcatt 9821025  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 10722918 - 10722950
Alignment:
Q  146 caaatatcttatatatccaatattttactcatt 178  Q
    |||||||||||||||||||||||||||||||||    
T  10722918 caaatatcttatatatccaatattttactcatt 10722950  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 9539680 - 9539754
Alignment:
Q  118 aaaactttaagacatttgatatatgaatcaaatatcttatatatccaatattttactcattcatagacgatgtga 192  Q
    |||| |||||| |||| ||||| || | || || |||||||||||||| |||||||||||| || ||||||||||    
T  9539680 aaaattttaagtcattagatatgtggaccatatctcttatatatccaacattttactcatttattgacgatgtga 9539754  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 26473359 - 26473387
Alignment:
Q  106 acatctccacttaaaactttaagacattt 134  Q
    |||||||||||||||||||||||||||||    
T  26473359 acatctccacttaaaactttaagacattt 26473387  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 31108193 - 31108258
Alignment:
Q  152 tcttatatatccaatattttactcattcatagacgatgtgatgatatttaatcactcacacttgaaacc 220  Q
    ||||||||||||||||| ||| || ||||||||| ||||||    | ||||||||||||||||||||||    
T  31108193 tcttatatatccaatatattattcgttcatagacaatgtgag---acttaatcactcacacttgaaacc 31108258  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 31022914 - 31022982
Alignment:
Q  152 tcttatatatccaatattttactcattcatagacgatgtgatgatatttaatcactcacacttgaaaccaat 223  Q
    |||| ||||||||| |||||| ||||||||||||||||   ||| |||||| ||||||||||| || |||||    
T  31022914 tcttgtatatccaacattttattcattcatagacgatg---tgagatttaaccactcacacttaaacccaat 31022982  T

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