View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10236_low_16 (Length: 300)
Name: NF10236_low_16
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10236_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 1460333 - 1460060
Alignment:
| Q |
17 |
gatttggatttggtgaaatacggcccaacccaattcaagtgtaaaccttgcctatcgaaaccctaattcttgttgcttttaaaagctattcgcttccaac |
116 |
Q |
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| T |
1460333 |
gatttggatttggtgaaatacggcccaacccaattcaagtgtaaaccttgcctatcgaaaccctaattcttgttgcttttaaaagctattcgcttccaac |
1460234 |
T |
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| Q |
117 |
cctaaccctgtttgtcaacctaatcatgaagaacaccttgccgtcgtaacagaatgtctcagccggaaacttcaacggtggaggctgtggaggaggaggt |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
1460233 |
cctaaccctgtctgtcaacctaatcatgaagaacaccttgccgtcgtaacagaatgtctcagccggaaacttcagcggtggaggctatggaggaggaggt |
1460134 |
T |
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| Q |
217 |
agataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttg |
290 |
Q |
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| T |
1460133 |
agataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttg |
1460060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 289
Target Start/End: Complemental strand, 1446786 - 1446712
Alignment:
| Q |
215 |
gtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagccttt |
289 |
Q |
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| T |
1446786 |
gtagataggataagcagtttaccagacgatatcctaattcaaattctctcttctcttcccaccaaacaagccttt |
1446712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 12094079 - 12094155
Alignment:
| Q |
214 |
ggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttg |
290 |
Q |
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| T |
12094079 |
ggtagataggatcagcaatttaccagacgatatcctgattcacattctgtcttcttttcccaccaaacaagcctttg |
12094155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 289
Target Start/End: Original strand, 12104419 - 12104494
Alignment:
| Q |
214 |
ggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagccttt |
289 |
Q |
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| T |
12104419 |
ggtagatatgatcagcaatttatcagacgatatcctgattcacattctctcttttcttcccaccaaacaagccttt |
12104494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 1460355 - 1460327
Alignment:
| Q |
1 |
ctaaagacaactgattgatttggatttgg |
29 |
Q |
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| T |
1460355 |
ctaaagacaactgattgatttggatttgg |
1460327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 820412 - 820488
Alignment:
| Q |
214 |
ggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttg |
290 |
Q |
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|||||||||||||| || ||||| ||||||||||| |||| ||||||||| || |||| |||||||||||||||| |
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| T |
820412 |
ggtagataggatcaacagtttactggatgatatcctgattcatattctctcttctgttcctaccaaacaagcctttg |
820488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 409117 - 409193
Alignment:
| Q |
214 |
ggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttg |
290 |
Q |
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|||||||||||| | | ||||||||| || || || |||||||||||||| | ||||||||||||||||||||| |
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| T |
409117 |
ggtagataggattggaagtttaccagacgagattctgattcacattctctcttttgttcccaccaaacaagcctttg |
409193 |
T |
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