View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10236_low_21 (Length: 254)
Name: NF10236_low_21
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10236_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 4862679 - 4862444
Alignment:
| Q |
1 |
taaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4862679 |
taaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgt |
4862580 |
T |
|
| Q |
101 |
tgttggagctttagagtttgcattgcagttggagatgagtgaggaagatactaagtctggttggactcatgaaaaggaaaaaagtgaggaaagacaacaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4862579 |
tgttggagctttagagtttgcattgcagttggagatgagtgaggaagatactaagtctggttggactcatgaaaaggaaaaaagtgaggaaagacaacaa |
4862480 |
T |
|
| Q |
201 |
gtgtcacagtttacaagtgaagatggaagtgatgtt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
4862479 |
gtgtcacagtttacaagtgaagatggaagtgatgtt |
4862444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 4698516 - 4698748
Alignment:
| Q |
1 |
taaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgt |
100 |
Q |
| |
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|||| ||||||||||| ||| ||| | ||| ||||||| |||||||| || |||||||||||||| |||||||||||||| ||||| ||||||||||| |
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| T |
4698516 |
taaaggattctataacggctgaatgtctaaaaagttattgccaaatggtgttgagttgtttgcatgatgatggaaatcaacggatgtcgatgagtgatgt |
4698615 |
T |
|
| Q |
101 |
tgttggagctttagagtttgcattgcagttggagatgagtgaggaagatactaagtctggttggactcatgaaaaggaaaaaagtgaggaaagacaacaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| | |||||||||||||||||||| ||||||||||| |
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| T |
4698616 |
tgttggagctttagagtttgcattgcagttggagataagtgaggaggatactaagtttggttggaataatgaaaaggaaaaaagtgagaaaagacaacaa |
4698715 |
T |
|
| Q |
201 |
gtgtcacagtttacaagtgaagatggaagtgat |
233 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| |
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| T |
4698716 |
gtgtcgcagtttataagtgaagatggaagtgat |
4698748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 4785163 - 4785315
Alignment:
| Q |
3 |
aaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||| | |
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| T |
4785163 |
aaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgtttgcatgatgatggaaatcaacgaatgtcgatgagtgatgtgg |
4785262 |
T |
|
| Q |
103 |
ttggagctttagagtttgcattgcagttggagatgagtgaggaagatactaag |
155 |
Q |
| |
|
||| | |||||||||||||||||||| |||||||||||||| |||| |||| |
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|
| T |
4785263 |
ttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaag |
4785315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 4817592 - 4817744
Alignment:
| Q |
3 |
aaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||| | |
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| T |
4817592 |
aaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgtttgcatgatgatggaaatcaacgaatgtcgatgagtgatgtgg |
4817691 |
T |
|
| Q |
103 |
ttggagctttagagtttgcattgcagttggagatgagtgaggaagatactaag |
155 |
Q |
| |
|
||| | |||||||||||||||||||| |||||||||||||| |||| |||| |
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|
| T |
4817692 |
ttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaag |
4817744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 4713400 - 4713512
Alignment:
| Q |
9 |
tctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
4713400 |
tctataacaagtgagtgtttgaaatgttattgtgaaatggtgttgagttgtttgcatggtgatggaaatcaacgaatgtctatgagtgatgtggttggga |
4713499 |
T |
|
| Q |
109 |
ctttagagtttgc |
121 |
Q |
| |
|
|||||||| |||| |
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|
| T |
4713500 |
ctttagagcttgc |
4713512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 4854770 - 4854882
Alignment:
| Q |
9 |
tctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggag |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||| ||||| ||||||||||| |||||| |
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|
| T |
4854770 |
tctataacaagtgagtgtttgaaattttattgtcaaatggtgttgagttgtttgcatggtgatggaaatcaacggatgtctatgagtgatgtggttggaa |
4854869 |
T |
|
| Q |
109 |
ctttagagtttgc |
121 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
4854870 |
ctttagagcttgc |
4854882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 149
Target Start/End: Complemental strand, 4642444 - 4642346
Alignment:
| Q |
51 |
ttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaagat |
149 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||| | || ||||| | |||||||||||| ||||| |||| | |||||||||||||| |
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|
| T |
4642444 |
ttaagttgtttgcatgatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaattggtggtgagtgaggaagat |
4642346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 149
Target Start/End: Complemental strand, 4635597 - 4635499
Alignment:
| Q |
51 |
ttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaagat |
149 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||| | || ||||| | |||||||||||| ||||| || | | |||||||||||||| |
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|
| T |
4635597 |
ttaagttgtttgcatgatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaattagtggtgagtgaggaagat |
4635499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 4660591 - 4660442
Alignment:
| Q |
1 |
taaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgt |
100 |
Q |
| |
|
||||||||||||| || |||||||||| ||| |||||| | ||| ||||||||||||||||| ||||| | ||||||| ||||||||| | || |
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|
| T |
4660591 |
taaaagattctatcacggatgagtgtttggaatattattgcaagttggcgttaagttgtttgcatgatgatgggactcaacgaccttcaatgagtcaagt |
4660492 |
T |
|
| Q |
101 |
tgttggagctttagagtttgcattgcagttggagatgagtgaggaagata |
150 |
Q |
| |
|
||||| | ||||||||||| ||||| |||| | ||||||||| ||||| |
|
|
| T |
4660491 |
ggttgggggtttagagtttgtgttgcaattggtggtgagtgagggagata |
4660442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 4629694 - 4629550
Alignment:
| Q |
6 |
gattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttg |
105 |
Q |
| |
|
|||||||| ||| |||||| ||||||| |||||| | ||| |||||||| |||||||| ||||| | ||||||| ||||||||| | || |||| |
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|
| T |
4629694 |
gattctatcacagttgagtgcttgaaatattattgcaagttggcgttaagttgcttgcatgatgatgggactcaacgaccctcaatgagtcaagtggttg |
4629595 |
T |
|
| Q |
106 |
gagctttagagtttgcattgcagttggagatgagtgaggaagata |
150 |
Q |
| |
|
| | |||||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
4629594 |
ggggtttagagtttgcattgcaattggtagtgagtgaagaagata |
4629550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 4671377 - 4671281
Alignment:
| Q |
54 |
agttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaagata |
150 |
Q |
| |
|
||||| |||||||| ||||||| ||||||| ||||||||| | || ||||| | ||||||||||| ||||| |||| | ||||||||||||||| |
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|
| T |
4671377 |
agttgcttgcatgatgatggaactcaacgaccctcaatgagtcaagtggttgggggtttagagtttgtgttgcaattggtggtgagtgaggaagata |
4671281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 4665675 - 4665576
Alignment:
| Q |
51 |
ttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaagata |
150 |
Q |
| |
|
|||||||| |||||||| ||||| | ||||||| ||||||||| | || ||||| | |||||||||||||||||| |||| ||||||| ||||||| |
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|
| T |
4665675 |
ttaagttgcttgcatgatgatgggactcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcattgcaattggtagtgagtgaagaagata |
4665576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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