View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10236_low_23 (Length: 241)
Name: NF10236_low_23
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10236_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 30142516 - 30142737
Alignment:
| Q |
2 |
gctgatcatatatcaattttcgtgtctcttttatgtgtatgaatttggtacgattgatgcttaattattctgtttcatattcataccgttgagattgttc |
101 |
Q |
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| T |
30142516 |
gctgatcatatatcaattttcttgtctctcttatgtgtatgaatttggtacaattgatgcttgattattctgtttcatattcataccgttgagattgttc |
30142615 |
T |
|
| Q |
102 |
gaattaattcatcgcttgtttaagttaatttgaacagaaaactatatatgc-tttctttttcgcttgtaaaaagggttgatagaatattgttatgatatt |
200 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||| ||||||||||||| |
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| T |
30142616 |
gaattaatccatcgcttgtttaaattaatttgaacagaaaactatatatgcttttttttttcgcttgcaaaaagggttgatcgaatcttgttatgatatt |
30142715 |
T |
|
| Q |
201 |
aactttgttcttggtgacgctt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
30142716 |
aactttgttcttggtgacgctt |
30142737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 19800722 - 19800921
Alignment:
| Q |
1 |
tgctgatcatatatcaattttcgtgtctcttttatgtgtatgaatttggtacgattgatgcttaattattctgtttcatattcataccgttgagattgtt |
100 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
19800722 |
tgctgatcatatatcaattttcttgtctctcttatgtgtatgaatttggtacaattgatgcttaattattctgtttca---tcataccgctgagattgtt |
19800818 |
T |
|
| Q |
101 |
cgaattaattcatcgcttgtttaagttaatttgaacagaaaactatatatgctttctttttcgcttgtaaaaagggttgatagaatattgttatgatatt |
200 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||| ||||||| ||| | |
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| T |
19800819 |
cgaattaatccatcgcttgtttaaattaatttgaacagaaaactatatatgct---tttttcacttgcaaaaagggttgatcgaa-cttgttataataat |
19800914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 22304047 - 22304266
Alignment:
| Q |
1 |
tgctgatcatatatcaattttcgtgtctcttttatgtgtatgaatttggtacgattgatgcttaattattctgtttcatattcataccgttgagattgtt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22304047 |
tgctgatcatatatcaattttcttgtctctcttatgtgtatgaatttggtacaattgatgcttaattattctgtttcatattcataccgttgagattgtt |
22304146 |
T |
|
| Q |
101 |
cgaattaattcatcgcttgtttaagttaatttgaacagaaaactatatatgctttctttttcgcttgtaaaaagggttgatagaatattgttatgatatt |
200 |
Q |
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|
||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||| |
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|
| T |
22304147 |
cgaattaatccatcgcttgtttaaattaatttgaacagaaaactatatatgct---tttttcgcttgcaaaaagggttgatcgaatcttgttatgatatt |
22304243 |
T |
|
| Q |
201 |
aactttgttcttggtgacgcttg |
223 |
Q |
| |
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||||||||||||||||| ||||| |
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|
| T |
22304244 |
aactttgttcttggtgatgcttg |
22304266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30742194 - 30741973
Alignment:
| Q |
1 |
tgctgatcatatatcaattttcgtgtctcttttatgtgtatgaatttggtacgattgatgcttaattattctgtttcatattcataccgttgagattgtt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30742194 |
tgctgatcatatatcaattttcttgtctctcttatgtgtatgaatttggtacaattgatgcttaattattctgtttcatattcataccgttgagattgtt |
30742095 |
T |
|
| Q |
101 |
cgaattaattcatcgcttgtttaagttaatttgaacagaaaactatatatgctttctttttcgcttgtaaaaagggttgatagaatattgttatgatatt |
200 |
Q |
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|
||||||||| |||| ||||| ||| ||||||||||||||||| |||| |||||||| |||||||||| ||||||||||||| |||| ||||||||||||| |
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|
| T |
30742094 |
cgaattaatccatcacttgtgtaaattaatttgaacagaaaaatatacatgctttc-ttttcgcttgcaaaaagggttgatcgaatcttgttatgatatt |
30741996 |
T |
|
| Q |
201 |
aactttgttcttggtgacgcttg |
223 |
Q |
| |
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||||||||||||||||| ||||| |
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|
| T |
30741995 |
aactttgttcttggtgaagcttg |
30741973 |
T |
|
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