View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10236_low_24 (Length: 239)

Name: NF10236_low_24
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10236_low_24
NF10236_low_24
[»] chr7 (13 HSPs)
chr7 (1-223)||(4862801-4863023)
chr7 (1-223)||(4698172-4698394)
chr7 (1-223)||(4784817-4785039)
chr7 (1-223)||(4817246-4817468)
chr7 (1-223)||(4713048-4713270)
chr7 (66-223)||(4847003-4847160)
chr7 (1-222)||(4652432-4652653)
chr7 (1-222)||(4629821-4630042)
chr7 (1-222)||(4665847-4666068)
chr7 (2-222)||(4642617-4642837)
chr7 (1-222)||(4660713-4660937)
chr7 (1-222)||(4635769-4635990)
chr7 (2-222)||(4671553-4671773)
[»] chr4 (1 HSPs)
chr4 (1-222)||(18926722-18926943)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4862801 - 4863023
Alignment:
Q  1 ctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4862801 ctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacc 4862900  T
Q  101 acggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4862901 acggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttgg 4863000  T
Q  201 tactcttcacgtcacggtgtatg 223  Q
    |||||||||||||||||||||||    
T  4863001 tactcttcacgtcacggtgtatg 4863023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4698394 - 4698172
Alignment:
Q  1 ctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacc 100  Q
    ||||||||| |||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||    
T  4698394 ctcaagaagcacaacaccaaaagagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcacc 4698295  T
Q  101 acggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttgg 200  Q
       ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  4698294 ttagtgctgacgtgggtcatcgacattcctgttggtcccacttttgataacccgaaatcagaaaccttagccacccatttatcatctaacaatatgttgg 4698195  T
Q  201 tactcttcacgtcacggtgtatg 223  Q
    |||||||||| ||||||||||||    
T  4698194 tactcttcacatcacggtgtatg 4698172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4785039 - 4784817
Alignment:
Q  1 ctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacc 100  Q
    ||||||||| |||||||||||||| ||||| || || ||||||||||||||||| || | ||||||||||||||| ||||| || |||||||| ||||||    
T  4785039 ctcaagaagcacaacaccgaaagagtacacatcagactttagagtcaacctttgtcgcatgtagtattctggatccaaatacccgagactacctttcacc 4784940  T
Q  101 acggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttgg 200  Q
    |  |||||||| || || || ||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |    
T  4784939 atagtgctgacatgggtcatcgacatccctgtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttttcatccaacaatatgtttg 4784840  T
Q  201 tactcttcacgtcacggtgtatg 223  Q
    |||||||||||||||||||||||    
T  4784839 tactcttcacgtcacggtgtatg 4784817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4817468 - 4817246
Alignment:
Q  1 ctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacc 100  Q
    ||||||||| |||||||||||||| ||||| || || ||||||||||| ||||| || | ||||||||||||||| ||||| || |||||||| ||||||    
T  4817468 ctcaagaagcacaacaccgaaagagtacacatcagactttagagtcaatctttgtcgcatgtagtattctggatccaaatacccgagactacctttcacc 4817369  T
Q  101 acggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttgg 200  Q
    |  |||||||| || || || ||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |    
T  4817368 atagtgctgacatgggtcatcgacatccctgtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttttcatccaacaatatgtttg 4817269  T
Q  201 tactcttcacgtcacggtgtatg 223  Q
    |||||||||| ||||||||||||    
T  4817268 tactcttcacatcacggtgtatg 4817246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4713270 - 4713048
Alignment:
Q  1 ctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacc 100  Q
    ||||||||| ||||| ||||| || |||||||| || || ||||||||| | |  || |||||| | |||||||| |||||||| | |||||||||||||    
T  4713270 ctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactctggatccaaatatcctatactacccttcacc 4713171  T
Q  101 acggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttgg 200  Q
    |  |||||||| ||||| || || || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |    
T  4713170 atagtgctgacatgagtcattgatatccctgttggtcccacttttgataaaccgaaatcagaaaccttagccacccatttttcatccaacaatatatttg 4713071  T
Q  201 tactcttcacgtcacggtgtatg 223  Q
    ||||||| |||||||||||||||    
T  4713070 tactcttaacgtcacggtgtatg 4713048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 4847160 - 4847003
Alignment:
Q  66 attctggatctaaatatccaagactacccttcaccacggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacac 165  Q
    |||||||||| |||||||| | ||||||||||||||  ||||| || ||||| || || || || |||||||||||||||||||||||||||||||| ||    
T  4847160 attctggatccaaatatcctatactacccttcaccatagtgcttacatgagtcattgatatcccggttggtcccacttttgataacccgaaatcagaaac 4847061  T
Q  166 cttagccacccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatg 223  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  4847060 cttagccacccatttttcatccaacaatatgtttgtactcttaacgtcacgatgtatg 4847003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4652432 - 4652653
Alignment:
Q  1 ctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacc 100  Q
    ||||||||| || |||||||| || ||||| || ||||||||||| | ||||||  | |  || ||||||||||| ||||| || || ||||||||||||    
T  4652432 ctcaagaagcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaaataccctaggctacccttcacc 4652531  T
Q  101 acggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttgg 200  Q
    |  ||||| || || ||  ||||||| | ||| ||||||||||| ||||| || |||||||| ||||||||||||||||| |||||||||||||||||||    
T  4652532 atcgtgctaacatgggttgtagacatccttgtcggtcccactttcgataatccaaaatcagaaaccttagccacccatttctcatccaacaatatgttgg 4652631  T
Q  201 tactcttcacgtcacggtgtat 222  Q
    | ||||||||||||||||||||    
T  4652632 tgctcttcacgtcacggtgtat 4652653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4629821 - 4630042
Alignment:
Q  1 ctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacc 100  Q
    ||||||||| || ||||| || || |||||||| ||||||||||| | ||||||  | |  |||||||| ||||| ||||||||||| || |||||||||    
T  4629821 ctcaagaagcaccacaccaaacgagtacacgtcagattttagagttagcctttggagcatatagtattcgggatccaaatatccaaggctccccttcacc 4629920  T
Q  101 acggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttgg 200  Q
    |  |||||||| || ||  | |  |||||||| |||||||| || ||||||||||||||||| |||||||| |||||||| |||||||||| ||||||||    
T  4629921 atcgtgctgacatgggtagtcgttattcctgtaggtcccaccttggataacccgaaatcagaaaccttagctacccatttctcatccaacagtatgttgg 4630020  T
Q  201 tactcttcacgtcacggtgtat 222  Q
    | ||||| |||||||| |||||    
T  4630021 tgctctttacgtcacgatgtat 4630042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4665847 - 4666068
Alignment:
Q  1 ctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacc 100  Q
    ||||||||| || |||||||| || ||||| || ||||||||||| | ||||||  | |  || ||||| ||||| |||||||| || || |||||||||    
T  4665847 ctcaagaagcaccacaccgaacgagtacacatcagattttagagttagcctttggagcatataatattcgggatccaaatatccgaggctccccttcacc 4665946  T
Q  101 acggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttgg 200  Q
    |  |||||||| || ||  | || || ||||| |||||||| || |||||||| || || || ||||| |||| ||||||||||||||||||||||||||    
T  4665947 atcgtgctgacatgggtagttgatatccctgtcggtcccaccttggataacccaaagtcggaaacctttgccatccatttttcatccaacaatatgttgg 4666046  T
Q  201 tactcttcacgtcacggtgtat 222  Q
    | ||||||||||||||||||||    
T  4666047 tgctcttcacgtcacggtgtat 4666068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 4642617 - 4642837
Alignment:
Q  2 tcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacca 101  Q
    |||||||| || |||||||| || ||||| || ||||||||||| | ||||||    |  ||||| || ||||||||||| ||||| || || |||||||    
T  4642617 tcaagaagtaccacaccgaacgagtacacatctgattttagagttagcctttggaacatatagtactcaggatctaaatacccaaggcttcctttcacca 4642716  T
Q  102 cggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttggt 201  Q
      ||||||| ||| ||  | || || ||||| |||||||| || ||||||||||| || || |||||||| | |||||||||||||||||||||||||||    
T  4642717 ttgtgctgatgtgggtagtcgatatccctgtaggtcccaccttggataacccgaagtcggaaaccttagctatccatttttcatccaacaatatgttggt 4642816  T
Q  202 actcttcacgtcacggtgtat 222  Q
     |||||||||||||| |||||    
T  4642817 gctcttcacgtcacgatgtat 4642837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4660713 - 4660937
Alignment:
Q  1 ctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacc 100  Q
    ||||||||| || |||||||| || ||||| || ||||||||||| ||||||||  | |  |||||||  ||||| ||||| ||||| || |||||||||    
T  4660713 ctcaagaagcaccacaccgaacgagtacacttcagattttagagttaacctttggagcatatagtattggggatccaaatacccaaggctccccttcacc 4660812  T
Q  101 acggtgctgacgtga---gtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgt 197  Q
    |  ||||||||||||   ||  | || || ||||| |||||||| || ||||||||||| || || |||||||| |||||||| | ||||||||||||||    
T  4660813 attgtgctgacgtgatgagtagtcgatatccctgtcggtcccaccttggataacccgaagtcggaaaccttagctacccatttgtgatccaacaatatgt 4660912  T
Q  198 tggtactcttcacgtcacggtgtat 222  Q
    |||| ||||| ||||| ||||||||    
T  4660913 tggtgctctttacgtcgcggtgtat 4660937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4635769 - 4635990
Alignment:
Q  1 ctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacc 100  Q
    ||||||||| || |||||||| || |||||||| ||||| ||||| | ||||||    |  ||||| || ||||||||||| || |  || ||||| ||     
T  4635769 ctcaagaagcaccacaccgaatgagtacacgtctgatttaagagtaagcctttggaacatatagtactcaggatctaaataccccaagcttcccttaaca 4635868  T
Q  101 acggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttgg 200  Q
    |  ||||||||||| ||  | || || ||||| |||||||| ||||||||||| |||||||| |||||||| | |||||| |||||||||||||||||||    
T  4635869 attgtgctgacgtgggtagtcgatatacctgtcggtcccacctttgataacccaaaatcagaaaccttagctatccatttctcatccaacaatatgttgg 4635968  T
Q  201 tactcttcacgtcacggtgtat 222  Q
    | ||||| |||||||| |||||    
T  4635969 tgctctttacgtcacgatgtat 4635990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 4671553 - 4671773
Alignment:
Q  2 tcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacca 101  Q
    |||||||| || |||||||| || ||||| || ||||||||||| | ||||||    |  ||||| || ||||||||||| ||||| || || |||||||    
T  4671553 tcaagaagtaccacaccgaatgagtacacatctgattttagagttagcctttggaacatatagtactcaggatctaaatacccaaggcttcctttcacca 4671652  T
Q  102 cggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttggt 201  Q
      ||||||||||| ||  | |  || || || |||||||| || ||||||||||| || || |||||||| | |||||| ||||||||||||||||||||    
T  4671653 ttgtgctgacgtgggtagttgttatccccgtgggtcccaccttggataacccgaagtcggaaaccttagctatccatttctcatccaacaatatgttggt 4671752  T
Q  202 actcttcacgtcacggtgtat 222  Q
     |||||||||||||| |||||    
T  4671753 gctcttcacgtcacgatgtat 4671773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 18926943 - 18926722
Alignment:
Q  1 ctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcacc 100  Q
    ||||||||| || |||||||| || |||||||| |||||||| || | ||||||  | |  ||||| || ||||||||||| |||||||| |||||||||    
T  18926943 ctcaagaagcaccacaccgaatgagtacacgtcagattttagggtaagcctttggagcatatagtactcaggatctaaatacccaagactccccttcacc 18926844  T
Q  101 acggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttgg 200  Q
    |  |||||||| || ||  | || || || ||||||||||| || ||||||||||| || || ||||||||||||||||| |||||||| ||||||||||    
T  18926843 attgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccacccatttctcatccaataatatgttgg 18926744  T
Q  201 tactcttcacgtcacggtgtat 222  Q
    | || ||||| ||||| |||||    
T  18926743 tgcttttcacatcacgatgtat 18926722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University