View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10236_low_25 (Length: 237)
Name: NF10236_low_25
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10236_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 29821960 - 29821755
Alignment:
| Q |
22 |
ctaaactgcataattatagaaactgactattgcaattattttaaattataaataaactatttaacatatataattttgatgatgt-caggagctttgata |
120 |
Q |
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| T |
29821960 |
ctaaactgcataattatagaaactgactattgcaattattttaaattataaataaactatttaacatatataattttgatgatgtgcaggagctttgata |
29821861 |
T |
|
| Q |
121 |
acccgtttctgtccaactaacagtggcccaggcgtatcacaattcacagcaacaaccttagcattagaatcttcatcaatcatggtttatctcttccata |
220 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29821860 |
acccgtttctgtccaactaacagtggcccaggcggatcacaattcacaacaacaaccttagcattagaatcttcaccaatcatggtttatctcttccata |
29821761 |
T |
|
| Q |
221 |
ttcatc |
226 |
Q |
| |
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|||||| |
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| T |
29821760 |
ttcatc |
29821755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 4030751 - 4030599
Alignment:
| Q |
74 |
taaactatttaacatatataattttgatgatgtcaggagctttgataacccgtttctgtccaactaacagtggcccaggcgtatcacaattcacagcaac |
173 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4030751 |
taaactatttaacatgtataattttgatgatgtcaggagctttgataacccgtttctgtccaactaacagtggcccaggcgtatcacaattcacagcaac |
4030652 |
T |
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| Q |
174 |
aaccttagcattagaatcttcatcaatcatggtttatctcttccatattcatc |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4030651 |
aaccttagcattagaatcttcatcaatcatggtttatctcttccatattcatc |
4030599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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