View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10236_low_3 (Length: 483)

Name: NF10236_low_3
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10236_low_3
NF10236_low_3
[»] chr5 (20 HSPs)
chr5 (6-466)||(25477662-25478122)
chr5 (27-301)||(25469724-25469998)
chr5 (7-166)||(32660658-32660819)
chr5 (327-438)||(25470065-25470176)
chr5 (1-270)||(32651310-32651579)
chr5 (4-271)||(32557356-32557623)
chr5 (29-258)||(32748035-32748267)
chr5 (5-257)||(32768245-32768499)
chr5 (186-271)||(32710673-32710758)
chr5 (14-76)||(32655772-32655834)
chr5 (109-217)||(32858860-32858968)
chr5 (24-85)||(32752074-32752135)
chr5 (96-268)||(32763335-32763510)
chr5 (348-447)||(32752395-32752495)
chr5 (387-449)||(32740837-32740899)
chr5 (395-442)||(32749918-32749965)
chr5 (109-163)||(28475213-28475267)
chr5 (36-78)||(32553070-32553112)
chr5 (389-435)||(32655380-32655426)
chr5 (389-449)||(32748420-32748480)
[»] chr7 (7 HSPs)
chr7 (92-268)||(7969384-7969563)
chr7 (325-449)||(37577819-37577943)
chr7 (1-259)||(37577453-37577711)
chr7 (1-163)||(32894973-32895135)
chr7 (333-403)||(32895282-32895352)
chr7 (4-41)||(7969623-7969660)
chr7 (420-449)||(32895342-32895371)
[»] chr1 (1 HSPs)
chr1 (114-261)||(17583849-17583996)
[»] chr2 (2 HSPs)
chr2 (384-449)||(16753107-16753172)
chr2 (189-293)||(16757426-16757530)


Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 6 - 466
Target Start/End: Original strand, 25477662 - 25478122
Alignment:
Q  6 ttgttttctttctgttgcttttatcattgattaatgttttggcaattgcggtgcagatgctaatattcataaagaccatggaaagtaaggtgatcccctt 105  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25477662 ttgttttctttctgttgcttttatcattgattaatgtgttggcaattgcggtgcagatgctaatattcataaagaccatggaaagtaaggtgatcccctt 25477761  T
Q  106 gacggttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaaggaaaagtaccaagtgaacgatgaacgtctgatcttttccggtaag 205  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  25477762 gagggttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaaggaaaagtaccaagtgaacgatcaacgtctgatattttccggtaag 25477861  T
Q  206 caactagatgactgccagaccattgccaattgcaacatccaagagaagtcaaccatccacctcatcttgcgcatcattggggactagacgacaaccgcac 305  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25477862 caactagacgactgccagaccattgccaattacaacatccaagagaagtcaaccatccacctcatcttgcgcaccattggggactagacgacaaccgcac 25477961  T
Q  306 ctatcatcctccgctatctgtgacccgtatcatgaagacaatcaccatataagtagaaaaatcatatattattggtaacatatagtctatgacttttgca 405  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25477962 ctatcatcctccgctatctgtgacccgtatcattaagacaatcaccatataagtagaaaaatcatatattattgataacatatagtctatgacttttgca 25478061  T
Q  406 tttcttatcatggatttgacttttgttctttttgttttgtcttgtgacctgtataatgatt 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  25478062 tttcttatcatggatttgacttttgttctttttgttttgtcttgtgacttgtatactgatt 25478122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 27 - 301
Target Start/End: Original strand, 25469724 - 25469998
Alignment:
Q  27 tatcattgattaatgttttggcaattgcggtgcagatgctaatattcataaagaccatggaaagtaaggtgatccccttgacggttaagagttcagacac 126  Q
    |||||||||||| ||| |||||||||| ||| ||||||| ||||||||||||||   ||||  | |||||| | ||||||| ||||||||||||||||||    
T  25469724 tatcattgattactgtgttggcaattgtggtacagatgcaaatattcataaagaagctggatggaaaggtgttacccttgagggttaagagttcagacac 25469823  T
Q  127 gatagacagtgtgaaggagaagatttttgacaaggaaaagtaccaagtgaacgatgaacgtctgatcttttccggtaagcaactagatgactgccagacc 226  Q
    |||| ||||||||||||||||||||||| ||||||||||||||  | | | |||| |||||||||||||||||||||| ||||||  |||    ||||||    
T  25469824 gatatacagtgtgaaggagaagatttttaacaaggaaaagtacgcaataatcgatcaacgtctgatcttttccggtaatcaactacctgatcatcagacc 25469923  T
Q  227 attgccaattgcaacatccaagagaagtcaaccatccacctcatcttgcgcatcattggggactagacgacaacc 301  Q
    |||||||||||||||||| ||||||||||| |||||  |||| |||| ||| |||| || |||||||||||||||    
T  25469924 attgccaattgcaacatcgaagagaagtcagccatcttcctcgtctttcgcctcatgggcgactagacgacaacc 25469998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 32660819 - 32660658
Alignment:
Q  7 tgttttctttctgttgcttttatcattgattaatgttttggcaattgcggtgcagatgctaatattcataaagaccatggaaagtaaggtgatccccttg 106  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| ||| ||||||| |||||||   || |||   |||||||||    
T  32660819 tgttttctttctgttgcttttaccattgattaatgtgttggcaattgcgatgcagatgcaaattttcataatgaccatgactagaaagaatatccccttg 32660720  T
Q  107 acggttaagagttcagacacgataga--cagtgtgaaggagaagatttttgacaaggaaaag 166  Q
    | |||||| |||||| |||| ||| |  ||||||||||||||||||||||||| ||||||||    
T  32660719 agggttaatagttcatacacaatataatcagtgtgaaggagaagatttttgacgaggaaaag 32660658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 327 - 438
Target Start/End: Original strand, 25470065 - 25470176
Alignment:
Q  327 gacccgtatcatgaagacaatcaccatataagtagaaaaatcatatattattggtaacatatagtctatgacttttgcatttcttatcatggatttgact 426  Q
    |||| |||||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||| ||||||||||||| |||||||| | | ||||||||    
T  25470065 gacctgtatcatgaagacaatcaccctataagtagaaaattaatatattattgataacatatagcctatgacttttgcttttcttattaagaatttgact 25470164  T
Q  427 tttgttcttttt 438  Q
    ||| || |||||    
T  25470165 tttttttttttt 25470176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 32651579 - 32651310
Alignment:
Q  1 gggttttgttttctttctgttgcttttatcattgattaatgttttggcaattgcggtgcagatgctaatattcataaagaccatggaaagtaaggtgatc 100  Q
    |||||||||||||||| ||||||||| |||||||||| |||| |||||||||||  ||||| ||| ||| |||| || |  |||    || |||   |||    
T  32651579 gggttttgttttctttatgttgctttaatcattgattgatgtgttggcaattgcaatgcagttgcgaattttcacaaggggcataactagaaagtgtatc 32651480  T
Q  101 cccttgacggttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaaggaaaagtaccaagtgaacgatgaacgtctgatcttttccg 200  Q
    | | ||| |||||| ||||  ||||| ||||| | |||||||||||||||| ||||| ||||||||  || |||| ||||  ||||| |||||||| | |    
T  32651479 ctcctgagggttaatagtttggacaccatagaaaatgtgaaggagaagattgttgacgaggaaaagaccccagtgtacgaccaacgtttgatctttgctg 32651380  T
Q  201 gtaagcaactagatgactgccagaccattgccaattgcaacatccaagagaagtcaaccatccacctcat 270  Q
    |||| |||||||| ||| ||| || | ||||| ||| || ||||||||| ||||||||||| ||||||||    
T  32651379 gtaaacaactagaggacggccggatccttgccgattacatcatccaagataagtcaaccattcacctcat 32651310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 271
Target Start/End: Complemental strand, 32557623 - 32557356
Alignment:
Q  4 ttttgttttctttctgttgcttttatcattgattaatgttttggcaattgcggtgcagatgctaatattcataaagaccatgg--aaagtaaggtgatcc 101  Q
    ||||||||| |||||| || ||| || ||||||| || | ||||| | |||||||||||||| |||||||||  ||  |||||     | ||| ||| ||    
T  32557623 ttttgttttatttctggtggtttcattattgatttatttgttggcgactgcggtgcagatgcaaatattcat--agcacatggttgtggaaagatgaccc 32557526  T
Q  102 ccttgacggttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaaggaaaagtaccaagtgaacgatgaacgtctgatcttttccgg 201  Q
    |||||| |||  ||||||||||||||||||  | ||||||||| |||||| |||||||||||| |  || |||| || |  |||||||||| ||| ||      
T  32557525 ccttgaaggtggagagttcagacacgatagcaaatgtgaaggataagattcttgacaaggaaacgatcccagtgcaccaacaacgtctgatgtttgccaa 32557426  T
Q  202 taagcaactagatgactgccagaccattgccaattgcaacatccaagagaagtcaaccatccacctcatc 271  Q
    ||||| |||||||||| |||| ||| ||||| ||| |||||||||||||||| ||||| |||||||||||    
T  32557425 taagctactagatgacagccatacccttgcctattacaacatccaagagaaggcaaccctccacctcatc 32557356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 258
Target Start/End: Original strand, 32748035 - 32748267
Alignment:
Q  29 tcattgattaatgttttggcaattgcggtgcagatgctaatattcataaagaccat---ggaaagtaaggtgatccccttgacggttaagagttcagaca 125  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||| |||    ||||  |||  | ||||| ||| |||||||||||||||||    
T  32748035 tcattgattaatgtgttggcaattgcggtgcagatgcaaatattcataaagatcatatatgaaaacaagaggttccccctgatggttaagagttcagaca 32748134  T
Q  126 cgatagacagtgtgaaggagaagatttttgacaaggaaaagtaccaagtgaacgatgaacgtctgatcttttccggtaagcaactagatgactgccagac 225  Q
    |||||  || ||||||| | ||| ||   |||||||||  |  ||  ||  || |  |||||||| ||||||||   |||||||||||  || |||||||    
T  32748135 cgatactcaatgtgaagaaaaaggttcaggacaaggaagggatccctgtccaccaacaacgtctgttcttttccaagaagcaactagagaaccgccagac 32748234  T
Q  226 cattgccaattgcaacatccaagagaagtcaac 258  Q
    | |||||| || |||||||||||||||||||||    
T  32748235 ccttgccagttacaacatccaagagaagtcaac 32748267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 257
Target Start/End: Original strand, 32768245 - 32768499
Alignment:
Q  5 tttgttttctttctgttgcttttatcattgattaatgttttggcaattgcggtgcagatgctaatattcataaagac-catggaaag--taaggtgatcc 101  Q
    |||||||||||||| |||||||| ||||||||| |||| || |||||||  |||||||||  |||||  ||||| |  | |||||||  |||| | || |    
T  32768245 tttgttttctttctattgcttttgtcattgattcatgtgttagcaattgtcgtgcagatggaaatatcaataaatatgcctggaaagattaagattattc 32768344  T
Q  102 ccttgacggttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaaggaaaagtaccaagtgaacgatgaacgtctgatcttttccgg 201  Q
    || ||| |||||||| ||||||||||||||  | ||||||| ||||| ||||| ||||||||  |  || |||  || |  ||||| |||| ||| ||||    
T  32768345 ccctgagggttaagatttcagacacgatagttaatgtgaagaagaagtttttt-acaaggaagggatcccagtacaccaacaacgtttgatatttgccgg 32768443  T
Q  202 taagcaactagatgactgccagaccattgccaattgcaacatccaagagaagtcaa 257  Q
    || ||||| |||||||  | ||||| ||||||||||||||||||||||||||||||    
T  32768444 taggcaacgagatgacaacgagacccttgccaattgcaacatccaagagaagtcaa 32768499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 32710673 - 32710758
Alignment:
Q  186 gtctgatcttttccggtaagcaactagatgactgccagaccattgccaattgcaacatccaagagaagtcaaccatccacctcatc 271  Q
    ||||||||||| || ||||| |||||| |||||| |||||| ||||||||| |||||||||||||||||||||| || ||||||||    
T  32710673 gtctgatctttgccagtaaggaactagctgactgtcagacccttgccaattacaacatccaagagaagtcaaccctcaacctcatc 32710758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 32655834 - 32655772
Alignment:
Q  14 tttctgttgcttttatcattgattaatgttttggcaattgcggtgcagatgctaatattcata 76  Q
    ||||||||||||| |||| |||||||||| |||||||||||||||||||||| ||||||||||    
T  32655834 tttctgttgctttaatcactgattaatgtgttggcaattgcggtgcagatgcaaatattcata 32655772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 32858860 - 32858968
Alignment:
Q  109 ggttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaagg-aaaagtaccaagtgaacgatgaacgtctgatcttttccggtaagca 207  Q
    ||||||||||||||||||||||| || ||||||||||| |||| ||||||||| |||| |||||| |  |||   |||||||||| |||||||||||| |    
T  32858860 ggttaagagttcagacacgatagtcaatgtgaaggagatgattcttgacaaggaaaaattaccaa-tacacggccaacgtctgatattttccggtaagga 32858958  T
Q  208 actagatgac 217  Q
    ||||||||||    
T  32858959 actagatgac 32858968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 32752074 - 32752135
Alignment:
Q  24 ttttatcattgattaatgttttggcaattgcggtgcagatgctaatattcataaagaccatg 85  Q
    |||| |||||||||||||| |||||||||||||  ||||||| |||||||||||||| ||||    
T  32752074 ttttttcattgattaatgtgttggcaattgcggcacagatgcaaatattcataaagatcatg 32752135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 268
Target Start/End: Original strand, 32763335 - 32763510
Alignment:
Q  96 tgatccccttgacggttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaaggaaaagtaccaagtgaacgatgaacgtctgatctt 195  Q
    |||||||||||| |||| ||||||||||||| ||||| | ||||||| | |||||| |||||||||||  |  || | || ||||  ||||||||||| |    
T  32763335 tgatccccttgagggttgagagttcagacacaatagaaaatgtgaagaaaaagattcttgacaaggaagggatcccaatgcacgagcaacgtctgatcat 32763434  T
Q  196 ---ttccggtaagcaactagatgactgccagaccattgccaattgcaacatccaagagaagtcaaccatccacctc 268  Q
          |||||||||  |||| |||  ||  ||| ||||||||| ||||||||||||||| |||||||||||||||    
T  32763435 cgacgacggtaagcagttagaggacaaccttacccttgccaattacaacatccaagagaattcaaccatccacctc 32763510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 447
Target Start/End: Original strand, 32752395 - 32752495
Alignment:
Q  348 caccatataagtagaaaaatcatatattattggtaacatat-agtctatgacttttgcatttcttatcatggatttgacttttgttctttttgttttgtc 446  Q
    |||| |||||||||| |||| | ||||||||| |||| ||  ||| | ||||||||||||||| ||  | |||||||||||||||||||| |||||||||    
T  32752395 caccttataagtagagaaataaaatattattgataacttaagagtgtttgacttttgcatttcgtaataaggatttgacttttgttctttatgttttgtc 32752494  T
Q  447 t 447  Q
    |    
T  32752495 t 32752495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 449
Target Start/End: Original strand, 32740837 - 32740899
Alignment:
Q  387 atagtctatgacttttgcatttcttatcatggatttgacttttgttctttttgttttgtcttg 449  Q
    ||||||| | ||||||||||||||||| |  |||||||| ||||| |||||||||||||||||    
T  32740837 atagtctttcacttttgcatttcttattaatgatttgacctttgtcctttttgttttgtcttg 32740899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 442
Target Start/End: Original strand, 32749918 - 32749965
Alignment:
Q  395 tgacttttgcatttcttatcatggatttgacttttgttctttttgttt 442  Q
    ||||||||||||||||||  | |||||||||||||||||||| |||||    
T  32749918 tgacttttgcatttcttaataaggatttgacttttgttctttatgttt 32749965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 28475213 - 28475267
Alignment:
Q  109 ggttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaaggaa 163  Q
    |||| |||||||||||||||||| |  ||||||| |||||||| |||||||||||    
T  28475213 ggttgagagttcagacacgatagtcgatgtgaagaagaagattcttgacaaggaa 28475267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 32553112 - 32553070
Alignment:
Q  36 ttaatgttttggcaattgcggtgcagatgctaatattcataaa 78  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||    
T  32553112 ttaatgtgttgacaattgcggtgcagatgcaaatattcataaa 32553070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 435
Target Start/End: Complemental strand, 32655426 - 32655380
Alignment:
Q  389 agtctatgacttttgcatttcttatcatggatttgacttttgttctt 435  Q
    ||||| |||||||| |||||||||| | |||||||||||||||||||    
T  32655426 agtctttgactttttcatttcttattaaggatttgacttttgttctt 32655380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 449
Target Start/End: Original strand, 32748420 - 32748480
Alignment:
Q  389 agtctatgacttttgcatttcttatcatggatttgacttttgttctttttgttttgtcttg 449  Q
    ||||| ||||||||||||||||||  | | |||||||||||||||||  ||||||| ||||    
T  32748420 agtctttgacttttgcatttcttaataagaatttgacttttgttcttcgtgttttgccttg 32748480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 92 - 268
Target Start/End: Complemental strand, 7969563 - 7969384
Alignment:
Q  92 aaggtgatccccttgacggttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaagga-aaag--taccaagtgaacgatgaacgtc 188  Q
    |||||||||||| |   |||||||||||||||||| |||| || |||||||||||||||||| |||||| | ||||  ||||||||  |||   ||||||    
T  7969563 aaggtgatccccataggggttaagagttcagacacaataggcaatgtgaaggagaagattttcgacaagaataaagattaccaagtacacgtgcaacgtc 7969464  T
Q  189 tgatcttttccggtaagcaactagatgactgccagaccattgccaattgcaacatccaagagaagtcaaccatccacctc 268  Q
    |||||||| || |||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  7969463 tgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctc 7969384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 325 - 449
Target Start/End: Original strand, 37577819 - 37577943
Alignment:
Q  325 gtgacccgtatcatgaagacaatcaccatataagtagaaaaatcatatattattggtaacatatagtctatgacttttgcatttcttatcatggatttga 424  Q
    ||||||| | ||||||||||||||||||||||||| || || ||||| ||||||| ||||||   |||| ||||||||||||||||||| | | ||||||    
T  37577819 gtgacccttgtcatgaagacaatcaccatataagttgagaagtcatacattattgataacattgggtctttgacttttgcatttcttattaagaatttga 37577918  T
Q  425 cttttgttctttttgttttgtcttg 449  Q
    ||||||||||||||||||| |||||    
T  37577919 cttttgttctttttgttttatcttg 37577943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 37577453 - 37577711
Alignment:
Q  1 gggttttgttttctttctgttgcttttatcattgattaatgttttggcaattgcggtgcagatgctaatattcataaagaccatggaaagtaaggtgatc 100  Q
    ||||||||||||||||||||||||||| |||| ||||||||| ||| ||| ||   ||||||||||||||| ||||  |||| |    || |||  ||||    
T  37577453 gggttttgttttctttctgttgcttttgtcatggattaatgtgttgccaaatgtcttgcagatgctaatatacatattgaccctcactagaaagaggatc 37577552  T
Q  101 cccttgacggttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaaggaaaagtaccaagtgaacgatg-aacgtctgatcttttcc 199  Q
    ||  ||| | ||||||||||||||||||||| |  |||||||||||||||| ||||||| |||  |  || | || |  ||| |||||||||||||| ||    
T  37577553 ccactgaggattaagagttcagacacgatagccgatgtgaaggagaagattcttgacaatgaagggatcccaatgcat-atgcaacgtctgatctttgcc 37577651  T
Q  200 ggtaagcaactagatgactgccagaccattgccaattgcaacatccaagagaagtcaacc 259  Q
    |||||| |||||||| |  ||| |||| ||||||||| | ||||||||||||||||||||    
T  37577652 ggtaaggaactagataatagcctgacccttgccaattaccacatccaagagaagtcaacc 37577711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 32894973 - 32895135
Alignment:
Q  1 gggttttgttttctttctgttgcttttatcattgattaatgttttggcaattgcggtgcagatgctaatattcataaagaccatggaaagtaaggtgatc 100  Q
    |||||| ||||| ||| |||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| |||||  ||   |  ||  | ||    
T  32894973 gggtttggttttgtttttgttgcttttattattgattaatgtgttggcaattgcggtgcagatgcaaatattcatagagacccagggtggagagaggttc 32895072  T
Q  101 cccttgacggttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaaggaa 163  Q
    ||| ||| ||||||||||||||||| ||||  || ||| | |||||||||| |||| ||||||    
T  32895073 cccctgatggttaagagttcagacaggatattcaatgtaatggagaagattcttgagaaggaa 32895135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 403
Target Start/End: Original strand, 32895282 - 32895352
Alignment:
Q  333 tatcatgaagacaatcaccatataagtagaaaaatcatatattattggtaacatatagtctatgacttttg 403  Q
    ||||||||||||||||| | ||||||||||||| ||||| ||||||| || |||| ||||| |||||||||    
T  32895282 tatcatgaagacaatcagcctataagtagaaaagtcatacattattgatagcatagagtctttgacttttg 32895352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 7969660 - 7969623
Alignment:
Q  4 ttttgttttctttctgttgcttttatcattgattaatg 41  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  7969660 ttttgttttctttatgttgtttttatcattgattaatg 7969623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 449
Target Start/End: Original strand, 32895342 - 32895371
Alignment:
Q  420 tttgacttttgttctttttgttttgtcttg 449  Q
    ||||||||||||||||||||||||||||||    
T  32895342 tttgacttttgttctttttgttttgtcttg 32895371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 17583849 - 17583996
Alignment:
Q  114 agagttcagacacgatagacagtgtgaaggagaagatttttgacaaggaaaagtaccaagtgaacgatgaacgtctgatcttttccggtaagcaactaga 213  Q
    |||||||||||||||||   | ||||||| |||||||| ||||||||||| |      |||| || |  ||||||||||||||  |||||||||||||||    
T  17583849 agagttcagacacgataatgaatgtgaagaagaagattcttgacaaggaagatattgcagtgcaccagcaacgtctgatctttgacggtaagcaactaga 17583948  T
Q  214 tgactgccagaccattgccaattgcaacatccaagagaagtcaaccat 261  Q
     |||  || |||| ||||| ||| ||||||||||||||||||||||||    
T  17583949 ggacaaccggacccttgccgattacaacatccaagagaagtcaaccat 17583996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 449
Target Start/End: Original strand, 16753107 - 16753172
Alignment:
Q  384 catatagtctatgacttttgcatttcttatcatggatttgacttttgttctttttgttttgtcttg 449  Q
    |||| ||||| ||||||||||||||||||| |  | ||| ||||||||||||||||||||||||||    
T  16753107 cataaagtctctgacttttgcatttcttattaatggttttacttttgttctttttgttttgtcttg 16753172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 16757426 - 16757530
Alignment:
Q  189 tgatcttttccggtaagcaactagatgactgccagaccattgccaattgcaacatccaagagaagtcaaccatccacctcatcttgcgcatcattgggga 288  Q
    |||||||| |||| ||||||||||||||| ||| |||  ||||| ||| |||||| ||| |  ||||||||||| || |   ||| |||||| |||||||    
T  16757426 tgatctttgccggcaagcaactagatgacagccggactgttgccgattacaacattcaaaatgagtcaaccatcgacgttgccttccgcatccttgggga 16757525  T
Q  289 ctaga 293  Q
    |||||    
T  16757526 ctaga 16757530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University