View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10236_low_4 (Length: 454)

Name: NF10236_low_4
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10236_low_4
NF10236_low_4
[»] chr1 (2 HSPs)
chr1 (163-435)||(33987368-33987640)
chr1 (1-163)||(33987131-33987293)
[»] chr2 (15 HSPs)
chr2 (163-381)||(8974165-8974383)
chr2 (235-435)||(9020231-9020432)
chr2 (282-435)||(8995828-8995982)
chr2 (282-435)||(8987895-8988048)
chr2 (281-435)||(9026206-9026361)
chr2 (164-243)||(8987815-8987894)
chr2 (164-243)||(8995748-8995827)
chr2 (84-163)||(8991782-8991861)
chr2 (84-163)||(9020042-9020121)
chr2 (84-166)||(8995614-8995696)
chr2 (312-353)||(9014897-9014938)
chr2 (191-242)||(9026154-9026205)
chr2 (84-141)||(8984463-8984520)
chr2 (84-131)||(8973987-8974034)
chr2 (119-163)||(8972980-8973024)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 163 - 435
Target Start/End: Original strand, 33987368 - 33987640
Alignment:
Q  163 agtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 262  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987368 agtttataaactaaaaagtaaatgcaacaatgcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 33987467  T
Q  263 ctcagccacaaaataaatcacaagaaataaattgttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttga 362  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987468 ctcagccaccaaaaaaatcacaagaaataaattgttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttga 33987567  T
Q  363 aattgatcaaccaaaactgtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaacaat 435  Q
    ||||||||||||||||||||| ||||||||| ||||| |||  ||| | ||||||||||||||| ||||||||    
T  33987568 aattgatcaaccaaaactgtataagttttaaattgccgaaatgtctacgttattaaaaactccataaaacaat 33987640  T

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Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 33987131 - 33987293
Alignment:
Q  1 gtttccaattcagaagaggtattatttcctttgcttcactttgctgcattttagtcctttctctctttgctgtatttttatccttttctaatgtctgcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987131 gtttccaattcagaagaggtattatttcctttgcttcactttgctgcattttagtcctttctctctttgctgtatttttatccttttctaatgtctgcaa 33987230  T
Q  101 atgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33987231 atgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgctatga 33987293  T

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Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 163 - 381
Target Start/End: Original strand, 8974165 - 8974383
Alignment:
Q  163 agtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 262  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  8974165 agttcataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagctatttctattttgaccctttagcagaattttgatctctgaggaggg 8974264  T
Q  263 ctcagccacaaaataaatcacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttg 361  Q
      || || | ||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  8974265 accaacctccaaa-aaaacacaagaaataaattgcttaacctgcaacaaaggcataaactattttgcagaaacttcatttttcaaataaattcttgtttg 8974363  T
Q  362 aaattgatcaaccaaaactg 381  Q
    ||||||||||||||||||||    
T  8974364 aaattgatcaaccaaaactg 8974383  T

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Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 235 - 435
Target Start/End: Original strand, 9020231 - 9020432
Alignment:
Q  235 ttagcagaattttgatctctgaggagggctcagccacaaaataaat-cacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaa 332  Q
    ||||||| |||||||||||||||| ||| ||||||| |||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9020231 ttagcagtattttgatctctgaggggggatcagccataaaaaaaaaacacaagaaataaattgcttaacctgcaacaaaggcataaattattttgcagaa 9020330  T
Q  333 acttgatttttcaaataaattcctgtttgaaattgatcaaccaaaactgtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaac 432  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||  ||| |||||||||||||||||||||||    
T  9020331 actttatttttcaaataaattcctgtttgaaattgattaaccaaaactgtatatg-tttaatttgccaaaatgtctacattattaaaaactccacaaaac 9020429  T
Q  433 aat 435  Q
    |||    
T  9020430 aat 9020432  T

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Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 282 - 435
Target Start/End: Original strand, 8995828 - 8995982
Alignment:
Q  282 acaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcaaccaaaact 380  Q
    ||||||||||||||| ||||||||||||||   |||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||    
T  8995828 acaagaaataaattgcttaacctgcaacaataacataaattattttgtagaaactctatttttcaaataaattcctatttgaaattgatcaaccaaaact 8995927  T
Q  381 gtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaacaat 435  Q
    ||| |||||||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  8995928 gtataagttttaatttgccaaaatgtctacattattaaaaactccacataacaat 8995982  T

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Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 282 - 435
Target Start/End: Original strand, 8987895 - 8988048
Alignment:
Q  282 acaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcaaccaaaact 380  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||| |||||||  ||||||||||||| ||||| |||||||||||||||||||||||    
T  8987895 acaagaaataaattgcttaacctgcaacaatgacataaattattttgtagaaactctatttttcaaataagttcctatttgaaattgatcaaccaaaact 8987994  T
Q  381 gtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaacaat 435  Q
    ||  ||||||||||||||| |||  ||| ||||||| ||||||||||||||||||    
T  8987995 gtgtaagttttaatttgccgaaatgtctacattatt-aaaactccacaaaacaat 8988048  T

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Target: chr2; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 281 - 435
Target Start/End: Original strand, 9026206 - 9026361
Alignment:
Q  281 cacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcaaccaaaac 379  Q
    |||||||||||||||| ||  |||||||||| | |||||||||||||| |||||||  |||||||||||||||  || |||||||||||| |||||||||    
T  9026206 cacaagaaataaattgcttctcctgcaacaatgacataaattattttgtagaaactctatttttcaaataaatatctatttgaaattgattaaccaaaac 9026305  T
Q  380 tgtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaacaat 435  Q
    |||| |||| |||||||||| |||  | | ||||||||||||||||||||||||||    
T  9026306 tgtataagtcttaatttgccgaaatgtttacattattaaaaactccacaaaacaat 9026361  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 8987815 - 8987894
Alignment:
Q  164 gtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaa 243  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||    
T  8987815 gtttataaactaaaaagtaaatgcaacaattcagctaaatttagttgaacaaccatttctatttcgacactttagcagaa 8987894  T

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Target: chr2; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 8995748 - 8995827
Alignment:
Q  164 gtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaa 243  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||    
T  8995748 gtttataaactaaaaagtaaatgcaacaattcagctaaatttagttgaacaaccatttctatttcgacactttagcagaa 8995827  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 8991782 - 8991861
Alignment:
Q  84 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 163  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||| |||||| | ||||| ||||||||||||    
T  8991782 ttttctaatgtctgcatataatgctgcagacttgacttgattgtttctagaaatggtgccagtgcagtgacttgttatga 8991861  T

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Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 9020042 - 9020121
Alignment:
Q  84 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 163  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||| |||||  |||| ||||||    
T  9020042 ttttctaatgtctgcatatgatgctgcatacttgacttgattgtttctagaagtgctgcaaatgcagtcactttttatga 9020121  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 8995614 - 8995696
Alignment:
Q  84 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatgagtt 166  Q
    ||||||||| || | | |||||||||||||||||||||||| ||||||||||  ||| ||||||||| |||||||||||||||    
T  8995614 ttttctaatttcagtatatgatgctgcagacttgacttgattgtttctagaaacggtccaactgcagtgacttgttatgagtt 8995696  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 9014897 - 9014938
Alignment:
Q  312 ggcataaattattttgcagaaacttgatttttcaaataaatt 353  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9014897 ggcataaattattttgcagaaacttgatttttcaaataaatt 9014938  T

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Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 9026154 - 9026205
Alignment:
Q  191 aattcagctaaattaagttgaatagccatttctatttcgaccctttagcaga 242  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||    
T  9026154 aattcagctaaatttagttgaacaaccatttctatttcgaccctttagcaga 9026205  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 8984463 - 8984520
Alignment:
Q  84 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtg 141  Q
    ||||||||||||| || ||||||||||| ||| |||||||| ||||||||||||||||    
T  8984463 ttttctaatgtcttcatatgatgctgcaaactagacttgattgtttctagaagtggtg 8984520  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 8973987 - 8974034
Alignment:
Q  84 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttct 131  Q
    |||||||||||||| | ||||||||||||||||||||| || ||||||    
T  8973987 ttttctaatgtctgtatatgatgctgcagacttgacttcattgtttct 8974034  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 8972980 - 8973024
Alignment:
Q  119 cttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 163  Q
    |||||| |||||||||| |||||||| ||||| ||||||||||||    
T  8972980 cttgattgtttctagaaatggtgcaagtgcagtgacttgttatga 8973024  T

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