View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10236_low_5 (Length: 447)
Name: NF10236_low_5
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10236_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 34747950 - 34748377
Alignment:
| Q |
1 |
gagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgagagacagtatacaaaaagagagtccaaatgctgaggttattctgttggagatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34747950 |
gagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgagagacaatatacaaaaagagagtccaaatgctgaggttattctgttggagatt |
34748049 |
T |
|
| Q |
101 |
gatcttagctctttttgttctgtacaaagattttgttctgattttttagctttagatcttccacttaatattctaatgtaagttttgtcatcatattgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34748050 |
gatcttagctctttttgttctgtacaaagattttgttctgattttttagctttagatcttccacttaatattctaatgtaagttttgtcatcatattgct |
34748149 |
T |
|
| Q |
201 |
ccaccttttcattttataataattaacatagtgaaagaaaatgggaaaaagtaatgatattttatgatatgtacactaatggttagaataaataaatttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34748150 |
ccaccttttcattttataataattaacatagtgaaagaaaatgggtaaaagtaatgatattttatgatatgtacactaatggttagaataaataaatttt |
34748249 |
T |
|
| Q |
301 |
acagaaacaatgctggtgtattctctcaagatttggagttctctgctgagaaaattgagatgacatttgccacaaattacttaggtacatttctaattct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34748250 |
acagaaacaatgctggtgtattctctcaagatttggagttctctgctgagaaaattgagatgacatttgccacaaattacttaggtacatttctaattct |
34748349 |
T |
|
| Q |
401 |
taattcttaatgcatatttggtatcata |
428 |
Q |
| |
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| T |
34748350 |
taattcttaatgcatatttggtatcata |
34748377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 7970895 - 7970679
Alignment:
| Q |
1 |
gagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgagagacagtatacaaaaagagagtccaaatgctgaggttattctgttggagatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7970895 |
gagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgaga--caatatacaaaaagagagtccaaatgctgaggttattctgttggaaatt |
7970798 |
T |
|
| Q |
101 |
gatcttagctctttttgttctgtacaaagattttgttctgattttttagctttagatcttccacttaatattctaatgtaagttttgtcatcatattgct |
200 |
Q |
| |
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| ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |
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| T |
7970797 |
ggtcttagctccttttcttctgtataaagattttgttctgattttttagctttagatcttccgcttaatattctaatgtaagttctgtcatcatattgtt |
7970698 |
T |
|
| Q |
201 |
ccaccttttcattttataa |
219 |
Q |
| |
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| || |||||||||||||| |
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|
| T |
7970697 |
ctactttttcattttataa |
7970679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 211 - 428
Target Start/End: Complemental strand, 7970655 - 7970439
Alignment:
| Q |
211 |
attttataataattaacatagtgaaagaaaatgggaaaaagtaatgatattttatgatatgtacactaatggttagaataaataaattttacagaaacaa |
310 |
Q |
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|
||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| |
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|
| T |
7970655 |
attttataataat-agcatagtgaaataaaatgggaaaaagtaatgatatttaatgatagggacactaatggttagaataaataaattttacagaaacaa |
7970557 |
T |
|
| Q |
311 |
tgctggtgtattctctcaagatttggagttctctgctgagaaaattgagatgacatttgccacaaattacttaggtacatttctaattcttaattcttaa |
410 |
Q |
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||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| || | ||||||||||||| ||||||||| | |
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| T |
7970556 |
tgctggtatattctctcaagttttggagttttctgcagagaaaattgagatgacatttgccacaaattatttggatacatttctaatttttaattcttga |
7970457 |
T |
|
| Q |
411 |
tgcatatttggtatcata |
428 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
7970456 |
tgcatatttggtatcata |
7970439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 43689467 - 43689644
Alignment:
| Q |
6 |
ttgtgattggtgcaagggacttgaagaaggcaatgaaagtgagagacagtatacaaaaagagagtccaaatgctgaggttattctgttggagattgatct |
105 |
Q |
| |
|
||||| ||||||| || ||| |||| ||||| |||||||||| ||| | || ||| | |||||||| |||||||||||||||| |||||||||||||| |
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| T |
43689467 |
ttgtggttggtgccagagacatgaaaaaggctatgaaagtgaaagaaaaaatccaagaggagagtccttatgctgaggttattctattggagattgatct |
43689566 |
T |
|
| Q |
106 |
tagctctttttgttctgtacaaagattttgttctgattttttagctttagatcttccacttaatattctaatgtaagt |
183 |
Q |
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||||||| || ||||||||||||||||||||| || |||||||||||||| | || ||||||||||| |||||||| |
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| T |
43689567 |
tagctctcttgcttctgtacaaagattttgttcagagtttttagctttagaattgccccttaatattctcatgtaagt |
43689644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 402
Target Start/End: Original strand, 43689982 - 43690036
Alignment:
| Q |
348 |
gagaaaattgagatgacatttgccacaaattacttaggtacatttctaattctta |
402 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||||| ||| | ||||||| |
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| T |
43689982 |
gagaaaattgaattgacatttgctacaaattacttaggtacttttttcattctta |
43690036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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