View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10236_low_6 (Length: 431)
Name: NF10236_low_6
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10236_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 5 - 377
Target Start/End: Complemental strand, 24125670 - 24125293
Alignment:
| Q |
5 |
gaggctgcaagccttcaggaaagcataaggtcacacatagttcaggattaagataccttcaagagcctattctatctaacagagccaattttcaaagtta |
104 |
Q |
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| T |
24125670 |
gaggctgcaagccttcaggaaagcatgaggtcacacatagttcacgattaagataccttcaagagcctattctatctaacagagccaattttcaaagtta |
24125571 |
T |
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| Q |
105 |
tctaattgaaagtta-------taccgtaactccattgcgccaacgctcattctctttgtaagagtagaagataaaattgaaagttatataatttgcatt |
197 |
Q |
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| T |
24125570 |
tctaaatgtaagtaaaaagaaataccgtaactccattgcgccaacgctcattctctttgtaagagtagaagataaaattgaaagttatataatttgcatt |
24125471 |
T |
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| Q |
198 |
ggtttggagtgaaaacacacacccaaattcagaagaaaaacgtactcccaaaagtgttttgaaaaatgctgcacaaaaattagatagattaaaaccacag |
297 |
Q |
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| T |
24125470 |
ggtttggagtgaaaacacacacccaaattcagaagaaaaacgtactctcaaaagtgttttgaaaaatgccgcacaaaaattagatagattaaaaccaca- |
24125372 |
T |
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| Q |
298 |
gaaaaattgtaatgaagtgacaaaatgaaaccaacaattatatcttgccaattgccattgtattttctttagacccttta |
377 |
Q |
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| T |
24125371 |
gaaaaattgtaatgaagtgac-aaatgaaaccagcaattatatcttgccaattgccattgtattttctttagacccttta |
24125293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Original strand, 17333349 - 17333377
Alignment:
| Q |
387 |
aagaaatcaaaatgaattatattaacaac |
415 |
Q |
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| T |
17333349 |
aagaaatcaaaatgaattatattaacaac |
17333377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 10561985 - 10562042
Alignment:
| Q |
130 |
ccattgcgccaacgctcattctctttgtaagagtagaagataaaattgaaagttatat |
187 |
Q |
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| T |
10561985 |
ccattgcgccaagtctcgtcctctctgtaagagtagaagatacaattgaaagttatat |
10562042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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