View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10236_low_8 (Length: 387)
Name: NF10236_low_8
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10236_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 1865437 - 1865064
Alignment:
| Q |
1 |
atccaggttttgatatgtttgcccca--actgattccttgttgtagactcatgtatgtattttgagtattataagtcgacacatttgatatatctccatg |
98 |
Q |
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| T |
1865437 |
atccaggttttgatatgtttgcccccccactgattccttgttgtagactcatgtttgtattttgagtattataagtcgacacatttgaaatatctccatg |
1865338 |
T |
|
| Q |
99 |
aaaagacatatcaataataccggatgatgatccaccatttttattattagataaacttgaatctacaccttgtagaatattttttagattcaagcctttt |
198 |
Q |
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| T |
1865337 |
aaaagacatatcaataataccggatgatgatccaccatttttagtattagataaacttgaatctacaccatgtagaatattttttagattcaagcctttt |
1865238 |
T |
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| Q |
199 |
gaagtttgcacatcaacatgatagcttgttggattctcagatactgtat-nnnnnnnnttaca--tagagccggaaaacaaaatagattacaattgaact |
295 |
Q |
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| T |
1865237 |
gaagtttgcacatcaacatgatagcttgttggattctcagatactgtataaaaaaaaattacatttagagccggaaaacaaaatagattacaattgaact |
1865138 |
T |
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| Q |
296 |
ttgaatatcatacttagaataataaatcatgtaacttcattgctttcaattccaaaacaataaatgtctttttt |
369 |
Q |
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| T |
1865137 |
ttgaatatcatacttagaataataaatcatgtaacttcattgctttcaattccaaaacaataaatgtctttttt |
1865064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 177
Target Start/End: Complemental strand, 1865685 - 1865511
Alignment:
| Q |
5 |
aggttttgatatgtttgcccc--aactgattccttgttgtagactcatgtatgtattttgagtattataagtcgacacatttgatatatctccatgaaaa |
102 |
Q |
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| T |
1865685 |
aggttttgatatgtttgccccccaactgattccttgttgtagactcatgtttgtattttgagtattataa---ggcacacttgaaatatctccatgaaaa |
1865589 |
T |
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| Q |
103 |
gacatatcaataataccggatgatgatccaccattttta---ttattagataaacttgaatctacaccttgtagaata |
177 |
Q |
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| T |
1865588 |
gacatatcaataataccagatgatgacccaccattattaaacgcgttagataaatttgaatccacaccatgtagaata |
1865511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 321
Target Start/End: Original strand, 51575544 - 51575578
Alignment:
| Q |
287 |
aattgaactttgaatatcatacttagaataataaa |
321 |
Q |
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| T |
51575544 |
aattgaactttgaatatcatgcttagaataataaa |
51575578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 51575447 - 51575492
Alignment:
| Q |
201 |
agtttgcacatcaacatgatagcttgttggattctcagatactgta |
246 |
Q |
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| T |
51575447 |
agtttgcacatcaacataatagcatgttggattctcaattactgta |
51575492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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