View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10236_low_9 (Length: 384)

Name: NF10236_low_9
Description: NF10236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10236_low_9
NF10236_low_9
[»] chr8 (13 HSPs)
chr8 (212-367)||(29160278-29160433)
chr8 (1-211)||(39254787-39254998)
chr8 (1-152)||(12351121-12351275)
chr8 (1-211)||(44752413-44752618)
chr8 (66-211)||(62144-62288)
chr8 (66-152)||(1366517-1366603)
chr8 (70-152)||(216451-216533)
chr8 (70-152)||(693011-693093)
chr8 (70-152)||(697220-697302)
chr8 (70-152)||(730074-730156)
chr8 (70-152)||(853969-854051)
chr8 (28-72)||(62047-62091)
chr8 (29-72)||(1366421-1366464)
[»] chr5 (3 HSPs)
chr5 (66-212)||(13654932-13655077)
chr5 (28-76)||(13655129-13655177)
chr5 (110-152)||(4553787-4553829)
[»] chr6 (1 HSPs)
chr6 (70-211)||(9574479-9574619)
[»] chr4 (10 HSPs)
chr4 (66-152)||(28684136-28684222)
chr4 (66-152)||(47199299-47199385)
chr4 (71-152)||(55159238-55159319)
chr4 (70-152)||(43738381-43738463)
chr4 (70-148)||(47524104-47524181)
chr4 (28-76)||(28684036-28684084)
chr4 (22-76)||(47199193-47199247)
chr4 (245-296)||(39624195-39624246)
chr4 (171-213)||(47198603-47198645)
chr4 (171-211)||(25371553-25371593)
[»] chr1 (6 HSPs)
chr1 (70-152)||(37874869-37874951)
chr1 (98-212)||(35616710-35616824)
chr1 (98-152)||(48870689-48870743)
chr1 (100-152)||(17494470-17494522)
chr1 (171-220)||(48869760-48869809)
chr1 (171-211)||(37874064-37874104)
[»] scaffold1037 (1 HSPs)
scaffold1037 (70-151)||(2807-2888)
[»] scaffold1031 (1 HSPs)
scaffold1031 (70-151)||(2926-3007)
[»] chr2 (4 HSPs)
chr2 (70-147)||(5277303-5277380)
chr2 (70-148)||(36475841-36475917)
chr2 (171-217)||(5276459-5276505)
chr2 (234-296)||(28104999-28105061)
[»] chr3 (2 HSPs)
chr3 (98-152)||(17227884-17227938)
chr3 (234-283)||(24094287-24094336)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 212 - 367
Target Start/End: Complemental strand, 29160433 - 29160278
Alignment:
Q  212 tctcttttgtattggattcttttattcaaaattattagaatccctacatttgagacttgaattttatcagtttgttcatagaatccgttatttccatctg 311  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29160433 tctcttttgtattggattcttctattcaaaattattagaatccctacatttgagacttgaattttatcagtttgttcatagaatccgttatttccatctg 29160334  T
Q  312 acatgtctacttagctcattaagagtcacatgacagatgatttgaccattacatgt 367  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29160333 acatgtctacttagctcattaagagtcacatgacagatggtttgaccattacatgt 29160278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 39254998 - 39254787
Alignment:
Q  1 attatgaagattttctggatattcatattgttttgttttgattttcgaaggagagaagagtgtgttgttgttgttaaggttagagatgatgtgaagcaaa 100  Q
    |||||||||||||||| ||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39254998 attatgaagattttctagatttccatgttgttttgttttgattttcaaaggagagaagagtgtgttgttgttgttaaggttagagatgatgtgaagaaaa 39254899  T
Q  101 tata--atgtggatagactataataacaatggtggtactactcaatctaatggtnnnnnnnnngacctttctatggtgggaaagaagtcttctttctcaa 198  Q
    ||||   |||||||||||||||||||||||| |||||||||||||||||||| |         ||| || |||||||||||||||||||| ||||| |||    
T  39254898 tatagtgtgtggatagactataataacaatgatggtactactcaatctaatgat-aaaaaaaagactttcctatggtgggaaagaagtctcctttcccaa 39254800  T
Q  199 gttaaatgtcacc 211  Q
     ||||||| ||||    
T  39254799 attaaatgccacc 39254787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 12351275 - 12351121
Alignment:
Q  1 attatgaagattttctggatattcatattgttttgttttgattttcgaaggagagaagagtgt---gttgttgttgttaaggttagagatgatgtgaagc 97  Q
    |||||||||||||||||||| | ||| ||||||||||||||||||| ||||||||||||||||   ||||||||||||||| ||||| |||||||||||     
T  12351275 attatgaagattttctggatttccatgttgttttgttttgattttctaaggagagaagagtgttttgttgttgttgttaagtttagaaatgatgtgaaga 12351176  T
Q  98 aaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12351175 aaatatagtgtggatagactataataacaatggtggtactactcaatctaatggt 12351121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 44752413 - 44752618
Alignment:
Q  1 attatgaagattttctggatattcatattgttttgttttgattttcgaaggagagaagagtgtgttgttgttgttaaggttagagatgatgtgaagcaaa 100  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||| |||||||||   ||||||||||||||||||||||||||| |||    
T  44752413 attatgaagattttttggattttcatgttgttttgttttgattttcaaaggagaga-gagtgtgtt---gttgttaaggttagagatgatgtgaagaaaa 44752508  T
Q  101 tataatgtggatagactataataacaatggtggtactactcaatctaatggtnnnnnnnnngacctttctatggtgggaaagaagtcttctttctcaagt 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||         ||  || |||||||||||||||||||| ||||| |||||    
T  44752509 tatagtgtggatagactataataacaatggtggtactactcaatttaatggt-aaaaaaaagattttcctatggtgggaaagaagtctcctttcccaagt 44752607  T
Q  201 taaatgtcacc 211  Q
    |||||| ||||    
T  44752608 taaatgccacc 44752618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 62144 - 62288
Alignment:
Q  66 tgttgttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggtnnnnnnnnngacc 165  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |         |||     
T  62144 tgttgatgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatgat-aaaaaaatgact 62242  T
Q  166 tttctatggtgggaaagaagtcttctttctcaagttaaatgtcacc 211  Q
    || |||||||||||||||||||| ||||||||| ||||||||||||    
T  62243 ttcctatggtgggaaagaagtctcctttctcaaattaaatgtcacc 62288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 1366517 - 1366603
Alignment:
Q  66 tgttgttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1366517 tgttgatgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggt 1366603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 216533 - 216451
Alignment:
Q  70 gttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||||||||||||||||||||||||  ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||    
T  216533 gttgttaaggttagagatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggt 216451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 693093 - 693011
Alignment:
Q  70 gttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||||||||||||||||||||||||  ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||    
T  693093 gttgttaaggttagagatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggt 693011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 697302 - 697220
Alignment:
Q  70 gttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||||||||||||||||||||||||  ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||    
T  697302 gttgttaaggttagagatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggt 697220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 730156 - 730074
Alignment:
Q  70 gttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||||||||||||||||||||||||  ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||    
T  730156 gttgttaaggttagagatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggt 730074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 854051 - 853969
Alignment:
Q  70 gttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||||||||||||||||||||||||  ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||    
T  854051 gttgttaaggttagagatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggt 853969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 62047 - 62091
Alignment:
Q  28 ttgttttgttttgattttcgaaggagagaagagtgtgttgttgtt 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  62047 ttgttttgttttgattttcgaaggagagaagagtgtgttgttgtt 62091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 1366421 - 1366464
Alignment:
Q  29 tgttttgttttgattttcgaaggagagaagagtgtgttgttgtt 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1366421 tgttttgttttgattttcgaaggagagaagagtgtgttgttgtt 1366464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 13655077 - 13654932
Alignment:
Q  66 tgttgttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggtnnnnnnnnngacc 165  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||         |||     
T  13655077 tgttgatgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggt-aaaaaaaagact 13654979  T
Q  166 tttctatggtgggaaagaagtcttctttctcaagttaaatgtcacct 212  Q
    || |||||||||||||||||||| ||||| ||| |||||||||||||    
T  13654978 ttcctatggtgggaaagaagtctcctttcccaaattaaatgtcacct 13654932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 13655177 - 13655129
Alignment:
Q  28 ttgttttgttttgattttcgaaggagagaagagtgtgttgttgttgtta 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13655177 ttgttttgttttgattttcgaaggagagaagagtgtgttgttgttgtta 13655129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 4553829 - 4553787
Alignment:
Q  110 gatagactataataacaatggtggtactactcaatctaatggt 152  Q
    |||||||||||||||||||| |||||||||| |||| ||||||    
T  4553829 gatagactataataacaatgatggtactacttaatcaaatggt 4553787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 9574479 - 9574619
Alignment:
Q  70 gttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggtnnnnnnnnngacctttc 169  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||         ||| || |    
T  9574479 gttgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatttaatggt-aaaaaaaagactttcc 9574577  T
Q  170 tatggtgggaaagaagtcttctttctcaagttaaatgtcacc 211  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  9574578 tatggtgggaaagaagtctcctttcccaagttaaatgccacc 9574619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 28684136 - 28684222
Alignment:
Q  66 tgttgttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  28684136 tgttgatgttaaggttagagatgatgtgaagaaaatatagtgtggctagactataataacaatggtggtactactcaatctaatggt 28684222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 47199299 - 47199385
Alignment:
Q  66 tgttgttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||| ||||||||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  47199299 tgttgatgttaaggttagagatgatgtaaagaaaatattgtgtggatagactataataacaatggtggtactactcaatctaatggt 47199385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 55159319 - 55159238
Alignment:
Q  71 ttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  55159319 ttgttaaggttagagatgatgtgaagaaattatagtgtggatagactataataataatggtggtactactcaatctaatggt 55159238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 43738381 - 43738463
Alignment:
Q  70 gttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||||||||||| |||| |||||||  ||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||    
T  43738381 gttgttaaggttaaagattatgtgaaaaaaatagagtgtggatagactatagtaataatggtggtactactcaatctaatggt 43738463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 47524104 - 47524181
Alignment:
Q  70 gttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaa 148  Q
    |||||||||||| ||||| |||||||  ||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  47524104 gttgttaaggttggagataatgtgaaa-aaatatagtgtggataggctataataacaatggtggtactactcaatctaa 47524181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 28684036 - 28684084
Alignment:
Q  28 ttgttttgttttgattttcgaaggagagaagagtgtgttgttgttgtta 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28684036 ttgttttgttttgattttcgaaggagagaagagtgtgttgttgttgtta 28684084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 47199193 - 47199247
Alignment:
Q  22 ttcatattgttttgttttgattttcgaaggagagaagagtgtgttgttgttgtta 76  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47199193 ttcatgttgttgtgttttgattttcgaaggagagaagagtgtgttgttgttgtta 47199247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 39624195 - 39624246
Alignment:
Q  245 attagaatccctacatttgagacttgaattttatcagtttgttcatagaatc 296  Q
    |||||||||||||||||||||||||  |||||||| ||| || |||||||||    
T  39624195 attagaatccctacatttgagacttatattttatctgttcgtccatagaatc 39624246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 47198645 - 47198603
Alignment:
Q  171 atggtgggaaagaagtcttctttctcaagttaaatgtcacctc 213  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||    
T  47198645 atggtgggaaagaagtctcctttcccaaattaaatgtcacctc 47198603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 25371553 - 25371593
Alignment:
Q  171 atggtgggaaagaagtcttctttctcaagttaaatgtcacc 211  Q
    |||||||||||||||||| ||||| ||| ||||||||||||    
T  25371553 atggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 37874869 - 37874951
Alignment:
Q  70 gttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||||    
T  37874869 gttgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatgatggtactaatcaatctaatggt 37874951  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 35616710 - 35616824
Alignment:
Q  98 aaatataatgtggatagactataataacaatggtggtactactcaatctaatggtnnnnnnnnngacctttctatggtgggaaagaagtcttctttctca 197  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||         ||| || | |||||||||||||||||| ||||| ||    
T  35616710 aaatatagtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaaagactttcccatggtgggaaagaagtctcctttccca 35616809  T
Q  198 agttaaatgtcacct 212  Q
    ||||||||| |||||    
T  35616810 agttaaatgccacct 35616824  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 48870689 - 48870743
Alignment:
Q  98 aaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48870689 aaatatagtgtggatagactataataacaatggtggtactactcaatctaatggt 48870743  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 17494522 - 17494470
Alignment:
Q  100 atataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  17494522 atatagtgtggatagactataataacaatggtggtactattcaatctaatggt 17494470  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 48869809 - 48869760
Alignment:
Q  171 atggtgggaaagaagtcttctttctcaagttaaatgtcacctctcttttg 220  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||||||    
T  48869809 atggtggaaaagaagtctcctttcccaagttaaatgtcacctctcttttg 48869760  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 37874104 - 37874064
Alignment:
Q  171 atggtgggaaagaagtcttctttctcaagttaaatgtcacc 211  Q
    ||||||||||||||||||  |||| ||||||||||||||||    
T  37874104 atggtgggaaagaagtctcatttcccaagttaaatgtcacc 37874064  T

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Target: scaffold1037 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 2807 - 2888
Alignment:
Q  70 gttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatgg 151  Q
    |||||||||||||||||||||| |||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  2807 gttgttaaggttagagatgatgcgaaaaaaatagagtgtggatagactataataacaatggtggtactactcaatctaatgg 2888  T

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Target: scaffold1031 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 2926 - 3007
Alignment:
Q  70 gttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaatgg 151  Q
    |||||||||||||||||||||| |||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  2926 gttgttaaggttagagatgatgcgaaaaaaatagagtgtggatagactataataacaatggtggtactactcaatctaatgg 3007  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 5277303 - 5277380
Alignment:
Q  70 gttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatcta 147  Q
    |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  5277303 gttgttaaggttggagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactacttaatcta 5277380  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 36475917 - 36475841
Alignment:
Q  70 gttgttaaggttagagatgatgtgaagcaaatataatgtggatagactataataacaatggtggtactactcaatctaa 148  Q
    |||||||||||| |||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36475917 gttgttaaggttggagatgatgtgaa--aaatatagtgtggatagactataataacaatggtggtactactcaatctaa 36475841  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 5276505 - 5276459
Alignment:
Q  171 atggtgggaaagaagtcttctttctcaagttaaatgtcacctctctt 217  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  5276505 atggtgggaaagaagtctcctttcccaagttaaatgccacctctctt 5276459  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 28105061 - 28104999
Alignment:
Q  234 tattcaaaattattagaatccctacatttgagacttgaattttatcagtttgttcatagaatc 296  Q
    ||||| |||||||||||||||||||| |||||| ||  |||||||| ||| || |||||||||    
T  28105061 tattctaaattattagaatccctacacttgagattttgattttatcggttcgtccatagaatc 28104999  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 17227884 - 17227938
Alignment:
Q  98 aaatataatgtggatagactataataacaatggtggtactactcaatctaatggt 152  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17227884 aaatatagtgtggatagactataataacaatggtggtactactcaatctaatggt 17227938  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 24094336 - 24094287
Alignment:
Q  234 tattcaaaattattagaatccctacatttgagacttgaattttatcagtt 283  Q
    ||||| |||| ||||||||||||||| |||||||||  ||||||||||||    
T  24094336 tattctaaataattagaatccctacacttgagacttagattttatcagtt 24094287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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