View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10237_high_1 (Length: 434)

Name: NF10237_high_1
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10237_high_1
NF10237_high_1
[»] scaffold0530 (1 HSPs)
scaffold0530 (2-419)||(6617-7023)
[»] chr4 (3 HSPs)
chr4 (151-272)||(36832816-36832935)
chr4 (164-225)||(35884268-35884329)
chr4 (164-233)||(36363602-36363670)
[»] chr5 (2 HSPs)
chr5 (164-225)||(19608814-19608875)
chr5 (184-275)||(1863092-1863183)
[»] chr8 (1 HSPs)
chr8 (151-274)||(3283367-3283491)
[»] chr6 (1 HSPs)
chr6 (164-275)||(24093782-24093892)
[»] chr3 (1 HSPs)
chr3 (164-275)||(9596293-9596404)
[»] chr7 (2 HSPs)
chr7 (189-274)||(28102889-28102974)
chr7 (167-272)||(46152237-46152340)
[»] chr2 (1 HSPs)
chr2 (203-275)||(1852822-1852894)
[»] chr1 (1 HSPs)
chr1 (202-274)||(2571039-2571111)


Alignment Details
Target: scaffold0530 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 2 - 419
Target Start/End: Original strand, 6617 - 7023
Alignment:
Q  2 taactacacactgatcatgaatataaccttggaatcaagtagccgaaatagaagattttgtagggctggcaattgctccagcaattccttggtgtcgagc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  6617 taactacacactgatcatgaatataaccttggaatcaagtagccgaaatagaagattttgtagggctggcaattgctccagcagttccttggtgtcaagc 6716  T
Q  102 ttttgggaattgctctgtatatatagaattaaaagtggattaatattttgttaagaaatcataatagaaataaatgataatatttatgtagaaaaagtca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6717 ttttgggaattgctctgtatatatagaattaaaagtggattaatattttgttaagaaatcataatagaaataaatgataatatttatgtagaaaaagtca 6816  T
Q  202 attttcaatgtttcaaagtgttgattgcatcattttcatgataaaatttcttttttgagcttcttaacaagtgctcaatagcaaattaagaatccaatgg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||    
T  6817 attttcaatgtttcaaagtgttgattgcatcattttcatgataaaatttcttttttgag-----------ttgctcaatagcaaattaagaatccaatgg 6905  T
Q  302 aggaacaaactatgtaagcaaagtattgaaaattgaacaggtacattcaagtaaagcaactctataatgatgcatacaaatacatatatgaaactaacca 401  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6906 aggaacaaactatgtaagcaaagtattgaaaaatgaacaggtacattcaagtaaagcaactctataatgatgcatacaaatacatatatgaaactaacca 7005  T
Q  402 attctatggatttatttt 419  Q
    ||||||||||||||||||    
T  7006 attctatggatttatttt 7023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 272
Target Start/End: Original strand, 36832816 - 36832935
Alignment:
Q  151 gttaagaaatcataatagaaataaatgataatatttatgtagaaaaagtcaattttcaatgtttcaaagtgttgattgcatcattttcatgataaaattt 250  Q
    |||||||| ||| ||||||||||||| ||||  ||||||||||||||||  ||||| || ||||||| || |||| ||||||||||| | |||||| |||    
T  36832816 gttaagaactca-aatagaaataaattataaattttatgtagaaaaagttcatttttaa-gtttcaatgtattgaatgcatcatttttaagataaacttt 36832913  T
Q  251 cttttttgagcttcttaacaag 272  Q
    || |||||||||| ||||||||    
T  36832914 ctcttttgagctttttaacaag 36832935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 35884268 - 35884329
Alignment:
Q  164 aatagaaataaatgataatatttatgtagaaaaagtcaattttcaatgtttcaaagtgttga 225  Q
    ||||||||||||| ||||  || |||||||||||||| ||||| || |||||||||||||||    
T  35884268 aatagaaataaattataaatttgatgtagaaaaagtctattttaaaagtttcaaagtgttga 35884329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 36363670 - 36363602
Alignment:
Q  164 aatagaaataaatgataatatttatgtagaaaaagtcaattttcaatgtttcaaagtgttgattgcatca 233  Q
    ||||||||||| || ||| ||||||||||||||| | | ||||||| ||||||| ||||||| |||||||    
T  36363670 aatagaaataattggtaagatttatgtagaaaaaattacttttcaa-gtttcaatgtgttgaatgcatca 36363602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 19608875 - 19608814
Alignment:
Q  164 aatagaaataaatgataatatttatgtagaaaaagtcaattttcaatgtttcaaagtgttga 225  Q
    ||||||||||| ||||||| |||||||||||||||| | |||| |||||||||| |||||||    
T  19608875 aatagaaataattgataatttttatgtagaaaaagttactttttaatgtttcaatgtgttga 19608814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 1863183 - 1863092
Alignment:
Q  184 tttatgtagaaaaagtcaattttcaatgtttcaaagtgttgattgcatcattttcatgataaaatttcttttttgagcttcttaacaagtgc 275  Q
    |||||||||| ||||| | |||| ||  |||||| ||||||| | |||||||| || |||||||||| |||||| | |||||||||||||||    
T  1863183 tttatgtagataaagttactttttaaactttcaatgtgttgaatacatcatttccaagataaaatttattttttaaacttcttaacaagtgc 1863092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 3283491 - 3283367
Alignment:
Q  151 gttaagaaatcataatagaaa-taaatgataatatttatgtagaaaaagtcaattttcaatgtttcaaagtgttgattgcatcattttcatgataaaatt 249  Q
    |||||||| ||| |||||||| ||||||||||  ||||||||||||||||||||||  ||  ||| ||  |||||| |||| ||||   | |||||||||    
T  3283491 gttaagaagtcaaaatagaaaataaatgataagttttatgtagaaaaagtcaatttctaaaattttaagttgttgaatgcaccattcataagataaaatt 3283392  T
Q  250 tcttttttgagcttcttaacaagtg 274  Q
    || ||||||  ||||||||||||||    
T  3283391 tcatttttggacttcttaacaagtg 3283367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 275
Target Start/End: Complemental strand, 24093892 - 24093782
Alignment:
Q  164 aatagaaataaatgataatatttatgtagaaaaagtcaattttcaatgtttcaaagtgttgattgcatcattttcatgataaaatttcttttttgagctt 263  Q
    ||||||||| ||| ||||  || |||||||||||||  ||||| || ||||||| ||||||| | |||||||  || |||||| ||||| |||| |||||    
T  24093892 aatagaaatgaattataaatttgatgtagaaaaagttcattttaaa-gtttcaaggtgttgaatacatcattcccaagataaactttctcttttaagctt 24093794  T
Q  264 cttaacaagtgc 275  Q
    ||||||||||||    
T  24093793 cttaacaagtgc 24093782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 275
Target Start/End: Complemental strand, 9596404 - 9596293
Alignment:
Q  164 aatagaaataaatgataatatttatgtagaaaaagtcaattttcaatgtttcaaagtgttgattgcatcattttcatgataaaatttcttttttgagctt 263  Q
    ||||||||||||| ||||  || |||| ||||||||  ||||| || ||||||  ||||||| | |||||| |  | |||||| |||||||||| |||||    
T  9596404 aatagaaataaattataaatttgatgtggaaaaagttcatttttaaagtttcatggtgttgaatacatcatctctaagataaactttcttttttaagctt 9596305  T
Q  264 cttaacaagtgc 275  Q
    ||||||||||||    
T  9596304 cttaacaagtgc 9596293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 28102974 - 28102889
Alignment:
Q  189 gtagaaaaagtcaattttcaatgtttcaaagtgttgattgcatcattttcatgataaaatttcttttttgagcttcttaacaagtg 274  Q
    |||||||||||  ||||| || |||| || ||||||| |||||||||   | |||||| |||||||||| || |||||||||||||    
T  28102974 gtagaaaaagtacattttaaaagttttaaggtgttgaatgcatcattaataagataaattttcttttttaagtttcttaacaagtg 28102889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 46152237 - 46152340
Alignment:
Q  167 agaaataaatgataatatttatgtagaaaaagtcaattttcaatgtttcaaagtgttgattgcatcattttcatgataaaatttcttttttgagcttctt 266  Q
    |||||||| ||||||  |||||||||||||| ||| |||||||  |||||| ||||||| ||||||| |  || || |||||||||| |||  |||||||    
T  46152237 agaaataattgataaactttatgtagaaaaattca-ttttcaaa-tttcaatgtgttgaatgcatcaatcccaagaaaaaatttcttctttaggcttctt 46152334  T
Q  267 aacaag 272  Q
    ||||||    
T  46152335 aacaag 46152340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 1852894 - 1852822
Alignment:
Q  203 ttttcaatgtttcaaagtgttgattgcatcattttcatgataaaatttcttttttgagcttcttaacaagtgc 275  Q
    |||||||| ||||||  | |||||| ||| |||| || |||||| ||||| |||||| |||||||||||||||    
T  1852894 ttttcaatatttcaatatattgattacataatttccaagataaagtttctattttgaacttcttaacaagtgc 1852822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 2571039 - 2571111
Alignment:
Q  202 attttcaatgtttcaaagtgttgattgcatcattttcatgataaaatttcttttttgagcttcttaacaagtg 274  Q
    ||||| || ||||||| ||||||| | |||||||  || ||||||||||| ||||| | ||||||||||||||    
T  2571039 atttttaaagtttcaatgtgttgaatacatcattcccaagataaaatttcctttttaaacttcttaacaagtg 2571111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University