View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10237_high_11 (Length: 250)
Name: NF10237_high_11
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10237_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 11821012 - 11820773
Alignment:
| Q |
1 |
tttacataagaaataccctcataatcatgtccaccacttctgattttaatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11821012 |
tttacataagaaataccctcataatcatgtccaccacttctgattttgatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagg |
11820913 |
T |
|
| Q |
101 |
gttgttttggagttactatgagtaatggttttgtcgttgaagttgtgttgaaacgtgcgttacgtatgtagtttttaagaacaatggaaaatgaagtgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11820912 |
gttgttttggagttactatgagtaatggttttgtcgttgaagttgtgttgaaacgtgcgttacgtatgtagtttttaagaacaatggaaaatgaagtgtt |
11820813 |
T |
|
| Q |
201 |
tgtttgagagaaaacaatgttggagattgttggatctgtg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11820812 |
tgtttgagagaaaacaatgttggagattgttggatctgtg |
11820773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 11835361 - 11835588
Alignment:
| Q |
10 |
gaaataccctcataatcatgtccaccacttctgattttaatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagggttgttttg |
109 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||| || |||||||||| |
|
|
| T |
11835361 |
gaaataccctcgtaatcatgtccaccgcttcttattttgatttgaatgttgacttgcttagcacatattacagtggattggacatgcgaaggttgttttg |
11835460 |
T |
|
| Q |
110 |
gagttactatgagtaatggttttgtcgttgaagttgtgttgaaacgtgcgttacgtatgtagtttttaagaacaatggaaaatgaagtgtttgtttgaga |
209 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||| ||||||||| || |
|
|
| T |
11835461 |
gagtgactatgagtaatggttttgttattgaagttgtgttgaaacgtgcgttacggatgtagttttgaaggacagtggaaaatgaaaggtttgtttggga |
11835560 |
T |
|
| Q |
210 |
gaaaacaatgttggagattgttggatct |
237 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
11835561 |
gaaaacaatgttggagattgatggatct |
11835588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 11933538 - 11933488
Alignment:
| Q |
3 |
tacataagaaataccctcataatcatgtccaccacttctgattttaatttg |
53 |
Q |
| |
|
|||||| |||| ||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
11933538 |
tacataggaaacaccctcatagtcatgtccaccacttctaattttcatttg |
11933488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 11946759 - 11946709
Alignment:
| Q |
3 |
tacataagaaataccctcataatcatgtccaccacttctgattttaatttg |
53 |
Q |
| |
|
|||||| |||| ||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
11946759 |
tacataggaaacaccctcatagtcatgtccaccacttctaattttcatttg |
11946709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University