View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10237_high_13 (Length: 238)

Name: NF10237_high_13
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10237_high_13
NF10237_high_13
[»] chr2 (7 HSPs)
chr2 (16-236)||(11821097-11821317)
chr2 (16-238)||(11835047-11835269)
chr2 (69-223)||(11933638-11933792)
chr2 (69-223)||(11946859-11947013)
chr2 (95-236)||(11917454-11917595)
chr2 (51-193)||(11803650-11803792)
chr2 (141-220)||(11787190-11787269)
[»] chr4 (10 HSPs)
chr4 (16-237)||(38125411-38125632)
chr4 (53-235)||(38090579-38090761)
chr4 (45-199)||(38129402-38129556)
chr4 (46-151)||(36107919-36108024)
chr4 (44-182)||(38061918-38062056)
chr4 (16-105)||(36080101-36080190)
chr4 (54-151)||(36100660-36100757)
chr4 (92-172)||(38081821-38081901)
chr4 (99-182)||(38072726-38072809)
chr4 (54-146)||(21482656-21482748)
[»] chr6 (1 HSPs)
chr6 (46-157)||(6838674-6838785)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 11821317 - 11821097
Alignment:
Q  16 cttcacccattgatttcctattcaaaagcctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11821317 cttcacccattgatttcctattcaaaagcctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgt 11821218  T
Q  116 accataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataa 215  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11821217 accataccctccaccactgaaatgaccaccaacaccgacagttggacacacaccagcaggaaaaccatgaaccttactcttctcataaattctataataa 11821118  T
Q  216 acttcaccaagtgtagcacca 236  Q
    |||||||||||||||||||||    
T  11821117 acttcaccaagtgtagcacca 11821097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 11835047 - 11835269
Alignment:
Q  16 cttcacccattgatttcctattcaaaagcctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgt 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  11835047 cttcacccattgatttcctattcaaaagccttcccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttctcaacattgc 11835146  T
Q  116 accataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataa 215  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||| ||| ||||||| || |||    
T  11835147 accataccctccaccactgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaa 11835246  T
Q  216 acttcaccaagtgtagcaccagc 238  Q
    |||||||||||||||||||||||    
T  11835247 acttcaccaagtgtagcaccagc 11835269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 11933792 - 11933638
Alignment:
Q  69 gcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacac 168  Q
    ||||| |||||||||||||| || | ||||||||||| || |||  ||||||| || |||||||| ||||| || ||||||||||| || |||||||| |    
T  11933792 gcatcgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaacggtaggacaaacgc 11933693  T
Q  169 cagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcacc 223  Q
    | || |||||||||||||| ||||| || |||| ||||||||| |||| ||||||    
T  11933692 cggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcacc 11933638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 11947013 - 11946859
Alignment:
Q  69 gcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacac 168  Q
    ||||| |||||||||||||| || | ||||||||||| || |||  ||||||| || |||||||| ||||| || ||||||||||| || |||||||| |    
T  11947013 gcatcgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaacggtaggacaaacgc 11946914  T
Q  169 cagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcacc 223  Q
    | || |||||||||||||| ||||| || |||| ||||||||| |||| ||||||    
T  11946913 cggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcacc 11946859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 11917595 - 11917454
Alignment:
Q  95 accatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaaccttactc 194  Q
    ||||||||||| || ||   ||||||| ||  ||||||| | ||| || |||||||||||||| |||||||| || || | |||| |||||   |||||     
T  11917595 accatattttctcatcaagttaccataaccagcaccactaacatgtcctccaacaccaacagtcggacaaacgccggccgcaaaagcatgagttttactt 11917496  T
Q  195 ttctcataaattctataataaacttcaccaagtgtagcacca 236  Q
    ||||||  ||||||||| ||||||||||||||||| ||||||    
T  11917495 ttctcagcaattctatagtaaacttcaccaagtgttgcacca 11917454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 193
Target Start/End: Original strand, 11803650 - 11803792
Alignment:
Q  51 ttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacac 150  Q
    |||||||| || |||| ||||||||| | ||||||| | |  | |||||||||||  || | ||||||| | || || |||||||| ||||| || ||||    
T  11803650 ttaacatctaccatttgagcatcaattacattatcagctgcaagaccatattttctaaataatgtaccaaatccacctccactgaagtgacctcctacac 11803749  T
Q  151 caacagttggacaaacaccagcaggaaaaccatgaaccttact 193  Q
    ||||||| ||||||  |||||| ||||| |||||||| |||||    
T  11803750 caacagtaggacaactaccagctggaaatccatgaacgttact 11803792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 11787190 - 11787269
Alignment:
Q  141 ccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttc 220  Q
    ||||||||||| | | |||  |||| ||||||||| ||||||||||| | ||| |||||||  |||||||||||||||||    
T  11787190 ccaccaacacctaaacttgtgcaaagaccagcagggaaaccatgaacatcacttttctcatgtattctataataaacttc 11787269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 38125632 - 38125411
Alignment:
Q  16 cttcacccattgatttcctattcaaaagcctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgt 115  Q
    |||||||||||||||||||||  | || |||||| ||||||||||||||||||||||||| || |||||||| ||| || ||| |||||| || |||  |    
T  38125632 cttcacccattgatttcctatcaagaatcctaccattaacatcaacaatttcagcatcaacaacattatcaatagacaacccaaattttctcatcatgtt 38125533  T
Q  116 accataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataa 215  Q
    |||||||||||||||||| || ||||||||||||||||||||   |||||| ||||||||||| |||||||| |||||||||||  | || |||||||||    
T  38125532 accataccctccaccactcaagtgaccaccaacaccaacagtaatacaaaccccagcaggaaagccatgaactttactcttctcccatatcctataataa 38125433  T
Q  216 acttcaccaagtgtagcaccag 237  Q
    || ||||||||| |||||||||    
T  38125432 acctcaccaagtatagcaccag 38125411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 53 - 235
Target Start/End: Complemental strand, 38090761 - 38090579
Alignment:
Q  53 aacatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacacca 152  Q
    |||||||||||| | |||||| | |||||||||||||||||| ||| |||||| || |||  |||||||||| |||||||| ||||| ||||||||||||    
T  38090761 aacatcaacaatcttagcatccaaaatattatcaacagataacccaaattttctcatcatgttaccataccccccaccactaaaatgtccaccaacacca 38090662  T
Q  153 acagttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcacc 235  Q
    ||||| |||||||| ||||| ||||||||||||||  ||||  ||||| |||| ||||||||||||||||||| |||||||||    
T  38090661 acagtaggacaaaccccagctggaaaaccatgaacactactaatctcagaaatcctataataaacttcaccaattgtagcacc 38090579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 38129556 - 38129402
Alignment:
Q  45 ctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccac 144  Q
    ||||| || ||||||| ||||| |||||||| ||||||||||| |||||| ||  |||||| || |||  ||||||||||||| ||||| ||||| ||||    
T  38129556 ctaccattgacatcaataattttagcatcaacaatattatcaatagataacccgaattttctcatcatgttaccataccctcctccactcaaatggccac 38129457  T
Q  145 caacaccaacagttggacaaacaccagcaggaaaaccatgaaccttactcttctc 199  Q
    |||||||||||||||||||||| || |||||||| |||||||| ||||| |||||    
T  38129456 caacaccaacagttggacaaacgccggcaggaaagccatgaactttacttttctc 38129402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 36108024 - 36107919
Alignment:
Q  46 tacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccacc 145  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||| | |||| |||||| || ||   |||||||||| ||||||  ||||||||||||    
T  36108024 tacccttaacatcaaccatttttgcatcaataatattatcaacagaaagaccaaattttctcatcaaattaccatacccaccaccagagaaatgaccacc 36107925  T
Q  146 aacacc 151  Q
    | ||||    
T  36107924 agcacc 36107919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 182
Target Start/End: Original strand, 38061918 - 38062056
Alignment:
Q  44 cctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgacca 143  Q
    ||||||||| |||||||  || | ||||||||||||||||||| | |  | |||  |||| |||| ||   | ||||| || ||||||||||| || |||    
T  38061918 cctacccttcacatcaattatgtgagcatcaataatattatcagctgcaagaccgaatttacgcaccaagtttccatagccaccaccactgaagtgtcca 38062017  T
Q  144 ccaacaccaacagttggacaaacaccagcaggaaaacca 182  Q
    |||||||| ||||| |||||| |||| ||||||||||||    
T  38062018 ccaacacctacagtaggacaagcaccggcaggaaaacca 38062056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 36080190 - 36080101
Alignment:
Q  16 cttcacccattgatttcctattcaaaagcctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttc 105  Q
    |||| ||||||||||| ||||  | ||  ||||| ||||||||||||||||  || ||||| |||||||||||||||| |||| ||||||    
T  36080190 cttctcccattgattttctatcaagaatactaccattaacatcaacaatttttgcgtcaattatattatcaacagatagaccaaattttc 36080101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 36100757 - 36100660
Alignment:
Q  54 acatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacacc 151  Q
    |||||||||||||  |||||||| |||||||||| ||| | |||| |||||| || ||   |||||||||| ||||||  ||||||||||||| ||||    
T  36100757 acatcaacaatttttgcatcaatgatattatcaatagaaagaccaaattttctcatcaaattaccatacccaccaccagagaaatgaccaccagcacc 36100660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 38081901 - 38081821
Alignment:
Q  92 taaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagc 172  Q
    |||||||||||| |||||||  || ||||| || |||||||||||||| ||||||||||| |  || |||||| |||||||    
T  38081901 taaaccatatttacgcaacaaggttccatagccgccaccactgaaatgtccaccaacacctattgtaggacaagcaccagc 38081821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 38072809 - 38072726
Alignment:
Q  99 tattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaacca 182  Q
    ||||| |||||||  || ||||| || ||||||||||| || ||||||||||| ||||| |||||||||||  |||| ||||||    
T  38072809 tatttacgcaacaaggttccatagccaccaccactgaagtgtccaccaacacctacagtaggacaaacacctccagggaaacca 38072726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 21482748 - 21482656
Alignment:
Q  54 acatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccacca 146  Q
    |||||||||||||  || |||||||||||||||||||| | |||| |||||| || |||  | ||||| || ||||||   ||||||||||||    
T  21482748 acatcaacaatttttgcgtcaataatattatcaacagaaagaccaaattttctcatcatatttccatatccaccaccagaaaaatgaccacca 21482656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 6838785 - 6838674
Alignment:
Q  46 tacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccacc 145  Q
    |||||||||||||||||||||  || |||||||||||||||| ||| | |||| |||||| || ||   | |||||||| ||||||  ||||||||||||    
T  6838785 tacccttaacatcaacaatttttgcgtcaataatattatcaatagaaagaccaaattttctcatcaaatttccatacccaccaccagagaaatgaccacc 6838686  T
Q  146 aacaccaacagt 157  Q
    | |||| |||||    
T  6838685 agcacctacagt 6838674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University