View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10237_low_11 (Length: 302)
Name: NF10237_low_11
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10237_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 2 - 291
Target Start/End: Complemental strand, 4962126 - 4961836
Alignment:
| Q |
2 |
aacaaccgacgatgacaaatttgaggatgtggctcgatttgaggcacacattttgcttgaaataattcaggaaggtaatttccacgatcatggtcaatca |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4962126 |
aacaaccgacgatgacaaatttgaggatgtggctcgatttgaggcacacattttgctgaaaataattcaggaaggtaatttccacgatcatggtcaatca |
4962027 |
T |
|
| Q |
102 |
ctaaagtgctgaaaaa-tctataatgtattttgttcctcattctctgctaaccatattcttttaacgtctctcggttctctttatcattaagatactcat |
200 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4962026 |
ctaaagtgctgaaaaaatctataatttattttgttcctcattctctgctaatcatattcttttaacgtctctcggttctctttatcattaagatactcat |
4961927 |
T |
|
| Q |
201 |
tctttgattcttatttctgctataatttatcctattaacatccttcaactatgcctaataaaactagacttgtcacctagtgcaatattct |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4961926 |
tctttgattcttatttctgctataatttatcctattaacatccttcaactatgcctaataaaactagacttgtcacctagtgcaatattct |
4961836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University