View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10237_low_12 (Length: 278)
Name: NF10237_low_12
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10237_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 38185977 - 38186221
Alignment:
| Q |
19 |
gattgtaattaatactaatatttaattacttaaactaaatattactagactatcacattgtttacaatttagtctctaaacggtgtaaatataataagta |
118 |
Q |
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| T |
38185977 |
gattgtaattaatactaatatttaattacttaaactaagtattactagactatcacattatttacaatttagtctctaaacggtgtaaatataataagta |
38186076 |
T |
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| Q |
119 |
gtccctaaacatataaaattcgtcaatttagtttttgaaattaagttgttatatactaaattgctgaatttttcatatattttagggtttaaattaacgg |
218 |
Q |
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| T |
38186077 |
gtccctaaacatataaaattcgtcaatttagtttttgaaattaagttgttatatactaaattactgaatttttcatatattttagggtttaaattaactg |
38186176 |
T |
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| Q |
219 |
atatcattcactctagggactaaatattttttgtatagatagatt |
263 |
Q |
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| T |
38186177 |
atatcattcactctagggactaattattttttgtatagatagatt |
38186221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 18754114 - 18754063
Alignment:
| Q |
102 |
tgtaaatataataagtagtccctaaac-atataaaattcgtcaatttagttt |
152 |
Q |
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| T |
18754114 |
tgtaaatataataagtagtttctaaagtatataaaattcgtcaatttagttt |
18754063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 32708696 - 32708764
Alignment:
| Q |
83 |
caatttagtctctaaacggtgtaaatataataagtagtccctaaac-atataaaattcgtcaatttagt |
150 |
Q |
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| T |
32708696 |
caatttagtctctaaactatacaaatataataactagtctctacactatataaaaatcgtcaatttagt |
32708764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 26634616 - 26634567
Alignment:
| Q |
102 |
tgtaaatataataagtagtccctaaac-atataaaattcgtcaatttagt |
150 |
Q |
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| T |
26634616 |
tgtaaatataataagttgtccctaaactatataaaattcgttaatatagt |
26634567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 8450152 - 8450193
Alignment:
| Q |
83 |
caatttagtctctaaacggtgtaaatataataagtagtccct |
124 |
Q |
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| T |
8450152 |
caatttagtctctaaagtgtgtaaatataataagtaatccct |
8450193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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