View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10237_low_13 (Length: 270)
Name: NF10237_low_13
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10237_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 2739466 - 2739203
Alignment:
| Q |
1 |
tgtatttttatcttttcaaattgaagaaatggaggtgatccaaaatg-aaaagtccttgactctttaattgcaaagtggttgagttttaatgcaatggag |
99 |
Q |
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| T |
2739466 |
tgtatttttatctttttaaattgaggaaatggaggtgatccaaaatggaaaagtccttgactctttaactataaagtggttgagttttaatgcagcggag |
2739367 |
T |
|
| Q |
100 |
ttagatgttaactccttggttgtagcaatcttgcaagtaaaggttagaaggctagtcgcctagtctgactagtgatagtttggtgctaaagattaaacgt |
199 |
Q |
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| T |
2739366 |
ttagatgttaactccttggttgtagcaatcttgcaagtaaaggttagaaggctagtcgcctagtcgaactagtcatagtttggtgctaaagattcaacgt |
2739267 |
T |
|
| Q |
200 |
ttattgcaaatggattgggaagtgaagaaccaacattcttatcgcgaaacatacttctgtgctg |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
2739266 |
ttattgcaaatggattgggaagtgaagaaccaacattcttattgcgaaacaaacttttgtgctg |
2739203 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38260482 - 38260436
Alignment:
| Q |
1 |
tgtatttttatcttttcaaattgaagaaatggaggtgatccaaaatg |
47 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
38260482 |
tgtatttttatcttttcaaatggaagaaatggaggagatccaaaatg |
38260436 |
T |
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