View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10237_low_14 (Length: 264)
Name: NF10237_low_14
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10237_low_14 |
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| [»] scaffold0117 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0117 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 15019 - 14766
Alignment:
| Q |
11 |
agcaaaggatgatccaaatatactggttgtaacgtatgagtttgagcatcaccaccagtccttcgccgatacggtgctccatcaaatcttcttcttaatc |
110 |
Q |
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| T |
15019 |
agcaaaggatgatccaaatatactggttgtaacgtatgagtttgagcatcaccaccagtccttcgccgatacggtgctccttcaaatcttcttcttaatc |
14920 |
T |
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| Q |
111 |
cacttctctatttattcatgttgcatctattgatttattttcttttgttacatgtgtttctttaattttagcggttaacagttttcacctcttggaacag |
210 |
Q |
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| T |
14919 |
cacttctctatttattcatgttgcatctattgatttattttcttttgttgtatgtgtttctttaattttagcggttaacagttttcacctcttggaacag |
14820 |
T |
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| Q |
211 |
ttatacgatattctttgtctcatccttcattgatgattattttttcgagtgtga |
264 |
Q |
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| T |
14819 |
ttatacgatattctttgtctcatccttcattgatgattattttttcgagtgtga |
14766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 262
Target Start/End: Complemental strand, 17614 - 17494
Alignment:
| Q |
143 |
atttattttcttttgttac-atgtgtttctttaattttagcggttaacagttttcacctcttggaacagttatacgatattctttgtctcatccttcatt |
241 |
Q |
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| T |
17614 |
atttattttcttttgttagtatgtgttcgtttaatttcagctgctaacagttttcacctcttggaatagttatgcgatatcctttatctcatccttcttc |
17515 |
T |
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| Q |
242 |
gatgattattttttcgagtgt |
262 |
Q |
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| T |
17514 |
gatgattattttttcgagtgt |
17494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 264
Target Start/End: Complemental strand, 10279227 - 10279057
Alignment:
| Q |
92 |
tcaaatcttcttcttaatccacttctctatttattcatgttgcatctattgatttattttcttttgttacatgtgtttctttaattttagcggttaacag |
191 |
Q |
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| T |
10279227 |
tcaaatctccttctcaatcaacttctctcttcattcatgttgcatctattaatttattttcttttatt-cgtatgttccttaaatttctgcggctaacag |
10279129 |
T |
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| Q |
192 |
ttttcacctcttggaacagttatacgatattctttgtctcatccttcattgatgattattttttcgagtgtga |
264 |
Q |
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| T |
10279128 |
tttttacctattggaacagttcggtgatatcctttgtctggtccttcatcgttga-tattttctcgagtgtga |
10279057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 10267408 - 10267331
Alignment:
| Q |
136 |
tctattgatttattttcttttgttac-atgtgtttctttaattttagcggttaacagttttcacctcttggaacagtt |
212 |
Q |
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| T |
10267408 |
tctattaatttattttcttttattcgtatgtgatcctttaatttcagcggctaacagttttcacctgttgtaacagtt |
10267331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 50355217 - 50355168
Alignment:
| Q |
11 |
agcaaaggatgatccaaatatactggttgtaacgtatgagtttgagcatc |
60 |
Q |
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| T |
50355217 |
agcaaaggatgatccaaatatcctggttgtaacgtacgagtttgagcatc |
50355168 |
T |
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