View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10237_low_15 (Length: 254)
Name: NF10237_low_15
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10237_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 33951347 - 33951580
Alignment:
| Q |
4 |
aatggatgggaataaggacataagaattttttcatataaatatttcttatgtgtagagcagcttaaagctgtattcattctcactgattgcagatagttt |
103 |
Q |
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| T |
33951347 |
aatggatggaaataaggacataagaattttttcatataaatatttcttatgtgtagagcagcttaaagctgtattcattctcattgattgcagatagttt |
33951446 |
T |
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| Q |
104 |
gtccttagagaatattatgtttaggagcggttcattattttccaaattacatcataggaaaacattgtaggctattccctgcaaatgacgatttaacata |
203 |
Q |
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| T |
33951447 |
gtccttagagaatattatgtttaggagcggttcattattttccaaattacatcataggaaaacattgtaggctattccctgcaaatgacgatttaacata |
33951546 |
T |
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| Q |
204 |
ttaaagaagcatttttctttgaattagattaatt |
237 |
Q |
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| T |
33951547 |
ttaaagaagcatttttctttgaattagattaatt |
33951580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 33973942 - 33974181
Alignment:
| Q |
4 |
aatggatgggaataaggacataagaattttttcatataaatatttcttatgtgtagagcagcttaaagctgtattcattctcactgattgcagatagttt |
103 |
Q |
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| T |
33973942 |
aatggatggaaataaggacataagaattttttcatataaatatttcttatgtgtagagcagcttaaagcggtattcatgctcgctgattgtagatagttt |
33974041 |
T |
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| Q |
104 |
gtccttagagaatattatgtttaggagcggttcattattttccaaattacatcataggaaaacattgtagg------ctattccctgcaaatgacgattt |
197 |
Q |
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| T |
33974042 |
gtccttagagaatattatgtttaggagcagttcattattttccaaattacatcataggaaaacattgtaggcatcttctatcctctgcaaatgttgattt |
33974141 |
T |
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| Q |
198 |
aacatattaaagaagcatttttctttgaattagattaatt |
237 |
Q |
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| T |
33974142 |
aacatattaaagaagcatttttctttgaattagattaatt |
33974181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 33990868 - 33991100
Alignment:
| Q |
14 |
aataaggacataagaattttttcatataaatatttcttatgtgtagagcagcttaaagctgtattcattctcactgattgcagatagt----ttgtcctt |
109 |
Q |
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| T |
33990868 |
aataaggaaataagaatttttt-atataaatatttcttgtgtgtagagcagcttaaagcggtattcatgctcgctgattgtagatagttagtttgtcctt |
33990966 |
T |
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| Q |
110 |
agagaatattatgtttaggagcggttcattattttccaaattacatcataggaaaacattgtagg------ctattccctgcaaatgacgatttaacata |
203 |
Q |
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| T |
33990967 |
agagaatattatgtttaggagccgttcattattttccaaattacatcataggaaaacattgtaggcatcttctattctctgcaaatgttgatttaacata |
33991066 |
T |
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| Q |
204 |
ttaaagaagcatttttctttgaattagattaatt |
237 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33991067 |
ttaaagaagcatttttctttgaattagattaatt |
33991100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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