View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10237_low_18 (Length: 247)
Name: NF10237_low_18
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10237_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 31164561 - 31164419
Alignment:
| Q |
19 |
aagttgttgctcaaaagcaacacgttttatagctcgagtacattatcgaatgagtaaaggtcaatgcattgatgttcggatagaatgactaatcactaga |
118 |
Q |
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| T |
31164561 |
aagttgttgctcgaaagcaacacgttttatagctcgagcacattatcgaatgagtaaaggtcaatgcattgatgttcggatagaatgactaatcactaga |
31164462 |
T |
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| Q |
119 |
aaaattataagagaaactattaagatataaagattaatgtgtttgataaatatat |
173 |
Q |
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| T |
31164461 |
a------------aagctattaagatataaagattaatgtgtttgataaatatat |
31164419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 31163129 - 31163080
Alignment:
| Q |
176 |
tgcataatattacaacttgcaagtgtctttcaaaccaacatatatttgga |
225 |
Q |
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| T |
31163129 |
tgcataatattacaacttgcaagtgtctttcaaaccaacatatatttgga |
31163080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 33225976 - 33225947
Alignment:
| Q |
114 |
ctagaaaaattataagagaaactattaaga |
143 |
Q |
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| T |
33225976 |
ctagaaaaattataagagaaactattaaga |
33225947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 28359397 - 28359439
Alignment:
| Q |
114 |
ctagaaaaattataagagaaactattaagatataaagattaat |
156 |
Q |
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| T |
28359397 |
ctagaaaaattataagagaaaatattaagatctagagattaat |
28359439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 44401268 - 44401239
Alignment:
| Q |
114 |
ctagaaaaattataagagaaactattaaga |
143 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44401268 |
ctagaaaaattataagagaaactattaaga |
44401239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 24399931 - 24399903
Alignment:
| Q |
115 |
tagaaaaattataagagaaactattaaga |
143 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
24399931 |
tagaaaaattataagagaaactattaaga |
24399903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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