View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10237_low_19 (Length: 243)
Name: NF10237_low_19
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10237_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 32525647 - 32525754
Alignment:
| Q |
5 |
aaaaatactctcagatttttcattgcagagaaaaactatgaaatataaaataattaataaaatcgttactataatatgtttaacgtacaacatttacact |
104 |
Q |
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| T |
32525647 |
aaaaatactctcagatttttcattgcagagaaaaactatgaaatataaaataattaataaaatcgttactataatatgtttaacgtaccacatttacact |
32525746 |
T |
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| Q |
105 |
tatctatc |
112 |
Q |
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|||||||| |
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| T |
32525747 |
tatctatc |
32525754 |
T |
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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 32525803 - 32525868
Alignment:
| Q |
161 |
gacaactttgtttttcaaaaatatatcatagatgttataaaataaggttacggagtacatgactct |
226 |
Q |
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| T |
32525803 |
gacaactttgtttttcaaaaatatatcatagatgttataaaataaggttacggagtacatgactct |
32525868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 32104005 - 32104061
Alignment:
| Q |
50 |
taaaataattaataaaatcgttactataatatgtttaacgtacaacatttacactta |
106 |
Q |
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| T |
32104005 |
taaaataattaataaaatcattatcaaaataggtttaaggtaccacatttacactta |
32104061 |
T |
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