View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10237_low_20 (Length: 239)
Name: NF10237_low_20
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10237_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4963783 - 4963999
Alignment:
| Q |
1 |
acagtaagaaacttgagatcaacatgccaaaattaacagataat----aacttaatgatctaagaacttacagaaacactaatatacttctnnnnnnnng |
96 |
Q |
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| T |
4963783 |
acagtaagaaacttgagagcaacatgccaaaattaacagctaattaataacttaatgatctaagaacttacagaaacactaaaaaa-----------aag |
4963871 |
T |
|
| Q |
97 |
ttcatgataacctcctcatcgagcctcatccgttcaatagtttcttccttaatgtaatttttctgcacttaaaaattataaatgaaacaattaagtcaaa |
196 |
Q |
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| T |
4963872 |
ttcatgataacctcctcatcgagcctcatccgttcaatagtttcttccataatgtaatttttttgtacttaaaaattatcaatgaaacaattaagtcaaa |
4963971 |
T |
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| Q |
197 |
tgaaaataaagctcctactgaagaatat |
224 |
Q |
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||||||||||| |||||||||||||||| |
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| T |
4963972 |
tgaaaataaagatcctactgaagaatat |
4963999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 8302201 - 8302130
Alignment:
| Q |
99 |
catgataacctcctcatcgagcctcatccgttcaatagtttcttccttaatgtaatttttctgcacttaaaa |
170 |
Q |
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|||||| ||||||||||| || |||||||||||||||||||||||||| ||||| |||||||||| |||||| |
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| T |
8302201 |
catgatgacctcctcatctagtctcatccgttcaatagtttcttccttgatgtagtttttctgcaattaaaa |
8302130 |
T |
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