View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10237_low_3 (Length: 408)
Name: NF10237_low_3
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10237_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 5 - 397
Target Start/End: Complemental strand, 43201324 - 43200934
Alignment:
| Q |
5 |
cactaataagtgactactactttcatactcagagagggcatgcctgaatgtccagagaaaggtatatatcagacacaaatcttttctaactcttagctat |
104 |
Q |
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| T |
43201324 |
cactaataagtgactactactttcatactcagagagggcatgcctgaatgtccagagaaaggtatatatcagacacaaatcttttctaactcttagctat |
43201225 |
T |
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| Q |
105 |
ctttttacacacatgctcatgcactatatatgctaataattcctagcttgaaattaactattcatccatcatattaataaaattatttgatgcaattgta |
204 |
Q |
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| T |
43201224 |
ctttttacacacatgctcatgcactatatatgctaat---tcctagcttgaaattaactattcattcatcatattaataaaattatttgatgcaattgta |
43201128 |
T |
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| Q |
205 |
cggc-agggagagatttgatgagatagggaagaagataaaaagagaaggagatcatgatgtttcaaattcatcaaatcagatgggaagaagacatatgtt |
303 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43201127 |
cggccagggagagatttgatgagatagggaagaagataaaaagagaaggagatcatgatgtttcaaattcatcaaatcagatgggaagaagacatatgtt |
43201028 |
T |
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| Q |
304 |
aggtccaccaggaaccctaaatactataaccccttgtgcagcatgtaagctattaagaagaagatgtgctcaagagtgtcccttttctccctat |
397 |
Q |
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| T |
43201027 |
aggtccaccaggaaccctaaatactataaccccttgtgcagcatgtaagctattaagaagaagatgtgctcaagagtgtcccttttctccctat |
43200934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 373
Target Start/End: Complemental strand, 31869453 - 31869410
Alignment:
| Q |
330 |
taaccccttgtgcagcatgtaagctattaagaagaagatgtgct |
373 |
Q |
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| T |
31869453 |
taaccccttgtgctgcatgtaagctattgagaagaagatgtgct |
31869410 |
T |
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