View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10237_low_4 (Length: 373)
Name: NF10237_low_4
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10237_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 8155289 - 8155523
Alignment:
| Q |
24 |
aaatgcagggtgcatgagccatggaggattcatgctcttcagtcttctatatgctcgagacacatagatcaaaggcagtagtttttcttattttgttcta |
123 |
Q |
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| T |
8155289 |
aaatgcagggtgcatgagccatggaagattcatgctcttcagtcttccatatgctcgagacacatagatcaaagacagtagttttccttattttgttcta |
8155388 |
T |
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| Q |
124 |
tcaacataaattaatgtatttggtctaaaatttgattcaaatacattaactcttgttgatcaannnnnnnncttatatatagaaccagaggtagtatatt |
223 |
Q |
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| T |
8155389 |
tcaacataaattaatgtatttggtctaaaatttgattcaaatacattaactcttgtcgat-aaatttttttcttatatataggaccagaggtagtatatt |
8155487 |
T |
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| Q |
224 |
cttaagatttgagtcttatataaactttctaaaatt |
259 |
Q |
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| T |
8155488 |
cttaagatttgagtcttatataatctttctaaaatt |
8155523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 355
Target Start/End: Original strand, 8155552 - 8155611
Alignment:
| Q |
296 |
ttctttaaagtgttatagttatgaaatatttttagactccattttattgattgtgacacc |
355 |
Q |
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| T |
8155552 |
ttctataaagtgttatagttatgaaatatttttagactccattttattgattgtgacacc |
8155611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 31280240 - 31280177
Alignment:
| Q |
123 |
atcaacataaattaatgtatttggtctaaaatttgattcaaatacattaactcttgttgatcaa |
186 |
Q |
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| T |
31280240 |
atcaacataaattaatgtatatggtacaaattttgaaccaaatacattaaattttgttgatcaa |
31280177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 22756903 - 22756961
Alignment:
| Q |
127 |
acataaattaatgtatttggtctaaaatttgattcaaatacattaactcttgttgatca |
185 |
Q |
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| T |
22756903 |
acataaatcgatgtatttggtataaattttgaatcaaatacgttaacttttgttgatca |
22756961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 28004650 - 28004707
Alignment:
| Q |
125 |
caacataaattaatgtatttggtctaaaatttgattcaaatacattaactcttgttga |
182 |
Q |
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| T |
28004650 |
caacaaaaattaatgtatttggtacaaattttgagccaaatacattaacttttgttga |
28004707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 8215241 - 8215281
Alignment:
| Q |
134 |
ttaatgtatttggtctaaaatttgattcaaatacattaact |
174 |
Q |
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| T |
8215241 |
ttaatgtatttggtctgaaatttgtatcaaatacattaact |
8215281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 10814932 - 10814900
Alignment:
| Q |
137 |
atgtatttggtctaaaatttgattcaaatacat |
169 |
Q |
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| T |
10814932 |
atgtatttggtctaaaatttgaatcaaatacat |
10814900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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