View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10237_low_9 (Length: 316)
Name: NF10237_low_9
Description: NF10237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10237_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 8e-92; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 10000939 - 10001148
Alignment:
| Q |
18 |
agattaataaacttttcatctaatggcgtgcatccatccaactttataggaaagtcggatatatgataaagccgatcgctgaggatcgaagtttttgttt |
117 |
Q |
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| T |
10000939 |
agattaataaacttttcatctaacgtcctccatccatccaactttattggaaagtcggatatatgatcaagccgattgctgaggatcgaagtttttgttt |
10001038 |
T |
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| Q |
118 |
attggttgattgcaaatataatttcatgactaaactagaaatgggtctagaactattttatgaatggttttgttttccatgatgttttttaattaccaaa |
217 |
Q |
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| T |
10001039 |
attggttgattgcaaata-aatttcatgaccaaactagaaatgggtctagaactattttatgaatggttttgttttccatgatgttttttaattaccaaa |
10001137 |
T |
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| Q |
218 |
cattggtttag |
228 |
Q |
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||||||||||| |
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| T |
10001138 |
cattggtttag |
10001148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 9995157 - 9995322
Alignment:
| Q |
18 |
agattaataaacttttcatctaatggcgtgcatccatccaactttataggaaagtcggatatatgataaagccgatcgctgaggatcgaagtttttgttt |
117 |
Q |
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| T |
9995157 |
agattaataaaatttgcatctaacggcctgcatccgtccgactttataggaaagacggatatacaataaagccgaccgttgaggatcaaattttttgttt |
9995256 |
T |
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| Q |
118 |
attggttgattgcaaatataatttcatgactaaactagaaatgggtctagaactattttatgaatggttttgt |
190 |
Q |
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| T |
9995257 |
attgg----ttgcaaata-aacttcatgactaaaattgaaatgggtct--aactattttatgaatggttttgt |
9995322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 22 - 295
Target Start/End: Original strand, 9988793 - 9989071
Alignment:
| Q |
22 |
taataaacttttcatctaatggcgtgcatccatccaactttatagga--aagtcggatatatgataaagccgatcgctgaggatcgaagtttttgtttat |
119 |
Q |
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| T |
9988793 |
taataaacttttaatctaacggcttgcatccatccgacctgatacaataaagtcggatatatcttaaagccgactgttgagaatcgaagttttcgtttat |
9988892 |
T |
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| Q |
120 |
tggttgattgcaaatataatttcatgactaaactagaaatgggtctaga-------actattttatgaatggttttgttttccatgatgttttttaatta |
212 |
Q |
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| T |
9988893 |
tggtgga----aaata-aatttcaggactaaaattgtaatgggtctaggcgctagcactatttgatgaatggttttgtattctatgatgttttttaatta |
9988987 |
T |
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| Q |
213 |
ccaaacattggtttagctagttgcttattttcttta-----acgataaggatgtttgatttgttattggacatgtttgtttatgtctt |
295 |
Q |
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| T |
9988988 |
ccaaacattggtt----tagttgtttattttcattaataatatgataaggatgtttgatttgttaatggacatgcatgtttatgtctt |
9989071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 10010545 - 10010647
Alignment:
| Q |
20 |
attaataaacttttcatctaatggcgtgcatccatccaactttataggaaagtcggatatatgataaagccgatcgctgaggatcgaagtttttgtttat |
119 |
Q |
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|||||||||||||| ||| || ||| || |||||||| || | || ||| ||||||||| |||||||||| || ||| |||| |||||||||||||| |
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| T |
10010545 |
attaataaacttttaatcaaacggcttgtatccatccggtttaaaagtaaaatcggatataccataaagccgaccgttgaagatctaagtttttgtttat |
10010644 |
T |
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| Q |
120 |
tgg |
122 |
Q |
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||| |
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| T |
10010645 |
tgg |
10010647 |
T |
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