View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10238_1 (Length: 515)

Name: NF10238_1
Description: NF10238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10238_1
NF10238_1
[»] chr7 (4 HSPs)
chr7 (15-325)||(41689006-41689316)
chr7 (325-488)||(41688812-41688965)
chr7 (194-319)||(41681723-41681848)
chr7 (356-484)||(41681512-41681643)
[»] chr8 (1 HSPs)
chr8 (271-324)||(42694112-42694165)
[»] chr4 (5 HSPs)
chr4 (193-226)||(45095803-45095836)
chr4 (441-488)||(44668669-44668716)
chr4 (441-488)||(44687945-44687992)
chr4 (198-251)||(44669009-44669062)
chr4 (198-251)||(44688285-44688338)
[»] chr1 (3 HSPs)
chr1 (276-323)||(43908127-43908174)
chr1 (269-308)||(43993934-43993973)
chr1 (197-249)||(43986536-43986588)
[»] chr2 (1 HSPs)
chr2 (269-323)||(20578413-20578467)


Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 325
Target Start/End: Complemental strand, 41689316 - 41689006
Alignment:
Q  15 aacctgtgttgaacctggtagcttcacagtcactacgtctcgcaatattctaggttcatgcaatgggttgttgtgtatgtatattagctctcaacatagt 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  41689316 aacccgtgttgaacctggtagcttcacagtcactacgtctcgcaatattctaggttcatgctatgggttgttgtgtatgtatattagctctcaacgtagt 41689217  T
Q  115 ttcagtctatacaacctttctatcaggtttatatccaaaaattctccaaaatcttcatcgcttgattgcgtgcattgctattatggctttggctatgatc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41689216 ttcagtctatacaacctttctatcaggtttatatccaaaaattctccaaaatcttcatcgcttgattgcgtgcattgctattatggctttggctatgatc 41689117  T
Q  215 aagttaacgacaaatataaggtgctactagttgtgcacaatacgaatgattatctgaccaaaatttatacctttggcgaagattcttggaaaactattcc 314  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41689116 aagttaacgacaaatataagatgctactagttgtgcacaatacgaatgattatctgaccaaaatttatacctttggtgaagattcttggaaaactattcc 41689017  T
Q  315 aaatttcccat 325  Q
    |||||||||||    
T  41689016 aaatttcccat 41689006  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 325 - 488
Target Start/End: Complemental strand, 41688965 - 41688812
Alignment:
Q  325 tctgaattggatggatgataaaagaggtgttagtgttgctgcctcaaagtgatggtgactacatgtgcaaagatatgctgtatgttttgagtaattgtct 424  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  41688965 tctgaattggatggatgataaaagaggtgttactgttgctgcctcaaagtgatggtgactacatgtgcaaagatatgctgtatgtt--------ttgtct 41688874  T
Q  425 ttgtgtgtgnnnnnnnaacaaaactcattgggttgcatggttgatgaaagagtatagagttgtt 488  Q
    ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41688873 ttgtgtgt--ttttttaacaaaactcattgggttgcatggttgatgaaagagtatagagttgtt 41688812  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 319
Target Start/End: Complemental strand, 41681848 - 41681723
Alignment:
Q  194 attatggctttggctatgatcaagttaacgacaaatataaggtgctactagttgtgcacaatacgaatgattatctgaccaaaatttatacctttggcga 293  Q
    |||||||||||||||||||||||||||| ||||  ||| |||||||| | ||||||| |||||  |||||||||||||||| | ||||||||||||  ||    
T  41681848 attatggctttggctatgatcaagttaatgacagttatgaggtgctagtcgttgtgcgcaataacaatgattatctgaccatactttatacctttgaaga 41681749  T
Q  294 agattcttggaaaactattccaaatt 319  Q
    |||||||| | ||||||||| |||||    
T  41681748 agattcttaggaaactattctaaatt 41681723  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 484
Target Start/End: Complemental strand, 41681643 - 41681512
Alignment:
Q  356 agtgttgctgcctcaaagtgatggtgactacatgtgcaaagatatgc---tgtatgttttgagtaattgtctttgtgtgtgnnnnnnnaacaaaactcat 452  Q
    ||||||| ||||||||||||| ||||||| | | | ||||||||||    || ||||||||||| || | |||||||||||       ||||| ||||||    
T  41681643 agtgttgttgcctcaaagtgacggtgacttcgtatacaaagatatgaatatgcatgttttgagtgatcgcctttgtgtgtgttttttgaacaagactcat 41681544  T
Q  453 tgggttgcatggttgatgaaagagtatagagt 484  Q
    |||||||  |||||||||||||||||| ||||    
T  41681543 tgggttgtgtggttgatgaaagagtatggagt 41681512  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 42694112 - 42694165
Alignment:
Q  271 accaaaatttatacctttggcgaagattcttggaaaactattccaaatttccca 324  Q
    |||| ||||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  42694112 accagaatttatacctttggtgaaaattcttggaaaactgttccaaatttccca 42694165  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 45095836 - 45095803
Alignment:
Q  193 tattatggctttggctatgatcaagttaacgaca 226  Q
    ||||||||||||||||||||||||||||||||||    
T  45095836 tattatggctttggctatgatcaagttaacgaca 45095803  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 44668716 - 44668669
Alignment:
Q  441 aacaaaactcattgggttgcatggttgatgaaagagtatagagttgtt 488  Q
    |||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  44668716 aacaaaactcattgggttgtgtggatgatgaaagagtatggagttgtt 44668669  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 44687992 - 44687945
Alignment:
Q  441 aacaaaactcattgggttgcatggttgatgaaagagtatagagttgtt 488  Q
    |||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  44687992 aacaaaactcattgggttgtgtggatgatgaaagagtatggagttgtt 44687945  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 44669062 - 44669009
Alignment:
Q  198 tggctttggctatgatcaagttaacgacaaatataaggtgctactagttgtgca 251  Q
    |||||||||||||||||||||||||||||  || ||||| |||  |||||||||    
T  44669062 tggctttggctatgatcaagttaacgacaggtacaaggtcctagcagttgtgca 44669009  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 44688338 - 44688285
Alignment:
Q  198 tggctttggctatgatcaagttaacgacaaatataaggtgctactagttgtgca 251  Q
    |||||||||||||||||||||||||||||  || ||||| |||  |||||||||    
T  44688338 tggctttggctatgatcaagttaacgacaggtacaaggtcctagcagttgtgca 44688285  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 43908127 - 43908174
Alignment:
Q  276 aatttatacctttggcgaagattcttggaaaactattccaaatttccc 323  Q
    ||||||||||||||| ||| ||||||||||| || |||||||||||||    
T  43908127 aatttatacctttggtgaaaattcttggaaatctcttccaaatttccc 43908174  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 43993973 - 43993934
Alignment:
Q  269 tgaccaaaatttatacctttggcgaagattcttggaaaac 308  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  43993973 tgaccaaaatttatacctttggtgaaaattcttggaaaac 43993934  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 43986588 - 43986536
Alignment:
Q  197 atggctttggctatgatcaagttaacgacaaatataaggtgctactagttgtg 249  Q
    |||| ||||||||||| ||| |||||||||| || ||||||||| ||||||||    
T  43986588 atggttttggctatgaccaaattaacgacaagtacaaggtgctagtagttgtg 43986536  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 20578467 - 20578413
Alignment:
Q  269 tgaccaaaatttatacctttggcgaagattcttggaaaactattccaaatttccc 323  Q
    |||||||||||||||| ||||| ||  |||||| |||||| ||||||||||||||    
T  20578467 tgaccaaaatttatacttttggtgagaattctttgaaaaccattccaaatttccc 20578413  T

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