View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10238_2 (Length: 424)

Name: NF10238_2
Description: NF10238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10238_2
NF10238_2
[»] chr6 (1 HSPs)
chr6 (13-424)||(29008844-29009255)


Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 424
Target Start/End: Complemental strand, 29009255 - 29008844
Alignment:
Q  13 tgagatttcactttctgaatttgcaggtacataaccaaattctctgttctgaattcataacaaactcttcaaccgcgcaaagatcatatatgttcgcttc 112  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29009255 tgagatttcactttctgaatttgcaggtacataaccacattctctgttctgaattcataacaaactcttcaaccgcgcaaagatcatataggttcgcttc 29009156  T
Q  113 aacttcttgattaaattcttcaaattccgattctggtttcattttattcaaattcaccttcacatttctatataatttgcatttgcacgctactattttc 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29009155 aacttcttgattacattcttcaaattccgattctggtttcattttattcaaattcaccttcacatttctatataatttgcatttgcacgctacaattttc 29009056  T
Q  213 actgaaactaattcttcaatttcatttgacactgttacggtgttatattcattcaattagatgaagaatttgaatcgaagctatagttaactctgtgnnn 312  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||       
T  29009055 actgaaactaattcttcaattgcatttgatactgttacggtgttgtattcattcgattagatgaagaatttgaatcgaagctatagttaactctgtgttt 29008956  T
Q  313 nnnnnnnnnnnnnnnnnnnnntaggaaaatgaggccagtctgggcagtgaaagctatgttcgtggtcgtcttggcttcaattctcttccgttgcgtttgt 412  Q
                         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29008955 ttgattttttggtttgatttgtaggaaaatgaggccagtctgggcagtgaaagctatgttcgtggtcgtcttggcttcgattctcttccgttgcgtttgt 29008856  T
Q  413 ggtggtaaccac 424  Q
    ||||||||||||    
T  29008855 ggtggtaaccac 29008844  T

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