View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10238_4 (Length: 400)
Name: NF10238_4
Description: NF10238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10238_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 3 - 400
Target Start/End: Complemental strand, 26080533 - 26080146
Alignment:
| Q |
3 |
catgtccaagaaaatgctgttatag--taggagatatgaaaaatcattttcatatcgtcacaaatttcaatgcagcttaccagaggggaagggacaagaa |
100 |
Q |
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| T |
26080533 |
catgtacaagaaaatgctgttatagtataggagatatgaaaa-----------atcgtcacaaatttcaatgcagcttaccagaggggaagggacaagaa |
26080445 |
T |
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| Q |
101 |
atgttaccaaatatacccttttaaatctgactcatcagttaaacaaattaaatctaatggtaaataagtgatggaggaccggtacacccttttacatagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
26080444 |
atgttaccaaatatacccttttaaatctgactcatcagttaaacaaattaaatctaatggtaaataagtgatgga-gatcggtacacccttttacatagg |
26080346 |
T |
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| Q |
201 |
tatgccttaaatgtggcctaaaaaacattctattactctaaattatgtttagcatattcaccatgcgattctgtcatagttcaaactgaatattcatgca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
26080345 |
tatgccttaaatgtggcctaaaaaacattctattactctaaattatgtttagcatgttcaccatgcgattctgtcacagttcatactgaatattcatgca |
26080246 |
T |
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| Q |
301 |
actttagcataatgaggcccaaccacaaccctataagaataacagttctcatgcgtcagttgcatacaatcgttgagctctcagaattttggataggtct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26080245 |
actttagcataatgaggcccaaccacaaccctataagaataacagttctcatgtgtcagttgcatacaatcgttgagctctcagaattttggataggtct |
26080146 |
T |
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