View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10238_low_1 (Length: 476)
Name: NF10238_low_1
Description: NF10238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10238_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 375
Target Start/End: Original strand, 28925988 - 28926351
Alignment:
| Q |
13 |
caaaggaaaacaggaattatgaagtgataacagaaacatagttcaagacttcaagtcctaaatgtaatactcatgtataaacagcagaaagtcaccaatc |
112 |
Q |
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| T |
28925988 |
caaaggaaaacaggaattatgaagtgataaaagaaacatagttcaagacttcaagtcctaaatgtaatactcatgtataaacagcagaaagtcaccaatc |
28926087 |
T |
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| Q |
113 |
atggtatatcaacggccaacggaccaagtcagcagttacctgtaagtacttcaattctgagataccctccaaaattatcaagtaaaatgacctcaaaatg |
212 |
Q |
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| T |
28926088 |
atggtatatccacggtcaacggaccaagtcaacagttacctgtaagtacttcaattctgagacaccctccaaaattatcaagtaaaatgacttcaaaatg |
28926187 |
T |
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| Q |
213 |
tacttgtgctatgtaatgt-cataaatattagtaaatgttgtacagaacaannnnnnnctctcactcaattaacagcaatctcaagaaacacaagagtaa |
311 |
Q |
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| T |
28926188 |
tacctgtgctatgtaatgtacataaatattagtaaatgttgtacagaacaatttttttctctcactccattaacagcaatctaaagaaacacgagagtaa |
28926287 |
T |
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| Q |
312 |
tgacaactaataaacagatagttggatataagagactctgataaaaatcacaccagctttccca |
375 |
Q |
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| T |
28926288 |
agacaactaacaaacagatagttggatataagagactctgatacaaatcacaccagctttccca |
28926351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 28932382 - 28932443
Alignment:
| Q |
148 |
ttacctgtaagtacttcaattctgagataccctccaaaattatcaagtaaaatgacctcaaa |
209 |
Q |
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| T |
28932382 |
ttacctgtaagtacttcaattctgacataccctcagaaattatcacgtaaagagacctcaaa |
28932443 |
T |
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