View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10238_low_4 (Length: 244)
Name: NF10238_low_4
Description: NF10238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10238_low_4 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
| [»] scaffold0577 (1 HSPs) |
| | |
|
| [»] scaffold0570 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 9611869 - 9611648
Alignment:
| Q |
12 |
tggacatcagtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgct |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9611869 |
tggacattagtaaagcatatgacagattagattgggattacctacgagaaatcatgattcaaatgggtttttcatctcgatgggttagttggattatgct |
9611770 |
T |
|
| Q |
112 |
ttgtgttgagacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcacct |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9611769 |
ttgtgttgagacggttgattactcggttttggttaatggagcttcagtgggtcctattgtgccaggacgcggactccgtcaaggggatcctctctcacct |
9611670 |
T |
|
| Q |
212 |
tatttatttatcatctgtgctg |
233 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
9611669 |
tatttatttatcatttgtgctg |
9611648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 27454840 - 27454638
Alignment:
| Q |
23 |
aaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgctttgtgttgaga |
122 |
Q |
| |
|
||||| ||||| ||| ||||||||||||| |||||||| || ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27454840 |
aaagcttatgatagactagattgggattatctacgagatatcatgattcaaatgggtttctcatctcgatgggttaactggattatgctttgtgttgaga |
27454741 |
T |
|
| Q |
123 |
cagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcaccttatttatttat |
222 |
Q |
| |
|
| |||||||||||||| |||||||||||||| | |||||||||||||| ||||| | ||||| ||||| || ||||| || ||||||||||| || || |
|
|
| T |
27454740 |
cggttgattactcggtcttggttaatggagcatcggtgggtcctattgtaccagggtgtggccttcgtcagggtgatcccctttcaccttatttgttcat |
27454641 |
T |
|
| Q |
223 |
cat |
225 |
Q |
| |
|
||| |
|
|
| T |
27454640 |
cat |
27454638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 14492881 - 14492754
Alignment:
| Q |
20 |
agtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgctttgtgttg |
119 |
Q |
| |
|
|||||| |||||||||| ||||| ||||| ||| | | || ||||||| |||||||| |||| ||||| || || |||||||||||| | ||||||| |
|
|
| T |
14492881 |
agtaaaccatatgacaggttagactgggaatacttgtgtgatgttatgatgcaaatgggattttaatctcgttgtgtcagttggattatgttatgtgttg |
14492782 |
T |
|
| Q |
120 |
agacagttgattactcggttttggttaa |
147 |
Q |
| |
|
||||| | || || || ||||||||||| |
|
|
| T |
14492781 |
agacaatagactattccgttttggttaa |
14492754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 26431560 - 26431339
Alignment:
| Q |
12 |
tggacatcagtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgct |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
26431560 |
tggacattagtaaagcatatgacagattagattgggattacctacaagaaatcatgattcaaatgagtttttcatctcgatgggttagttggattatgct |
26431461 |
T |
|
| Q |
112 |
ttgtgttgagacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcacct |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26431460 |
ttgtgttgagacggttgattactcggttttggttaatggagcttcagtgggtcctattgtgccaggacgcggactccgtcaaggggatcctctctcacct |
26431361 |
T |
|
| Q |
212 |
tatttatttatcatctgtgctg |
233 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
26431360 |
tatttatttatcatttgtgctg |
26431339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 48444439 - 48444657
Alignment:
| Q |
12 |
tggacatcagtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgct |
111 |
Q |
| |
|
||||||| |||||||| ||||| ||| |||||||||| || |||||||| || |||||| |||||||||| || ||||| |||||||| ||||||||||| |
|
|
| T |
48444439 |
tggacattagtaaagcttatgatagactagattgggactatctacgagatatcatgatttaaatgggtttctcatctcgttgggttagctggattatgct |
48444538 |
T |
|
| Q |
112 |
ttgtgttgagacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcacct |
211 |
Q |
| |
|
|||||||||||| ||||| || || || |||||||||||||| |||||| ||||||||| ||||| |||||||| ||||| || ||||| || |||||| |
|
|
| T |
48444539 |
ttgtgttgagacggttgactattcagtcttggttaatggagcactagtggatcctattgtaccagggcgcggccttcgtcagggtgatcccctttcacct |
48444638 |
T |
|
| Q |
212 |
tatttatttatcatctgtg |
230 |
Q |
| |
|
|||||||| ||||| |||| |
|
|
| T |
48444639 |
tatttattcatcatttgtg |
48444657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 2542443 - 2542653
Alignment:
| Q |
20 |
agtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgctttgtgttg |
119 |
Q |
| |
|
|||||||| ||||| | |||||||||||||| ||| ||||| || ||||||||||||||||| || || ||||||||||||||||| ||||| |||| |
|
|
| T |
2542443 |
agtaaagcttatgatatattagattgggatttccttcgagatatcatgattcaaatgggtttctcctccgaatgggttagttggattacgctttacgttg |
2542542 |
T |
|
| Q |
120 |
agacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcaccttatttatt |
219 |
Q |
| |
|
| || ||||| |||||||| ||||| |||||||| |||||||||||||||||| | || ||||| |||| || ||||| |||||||||||| |||| |
|
|
| T |
2542543 |
aaacggttgactactcggtcttggtcaatggagcaacggtgggtcctattgtgccaaggcgtggcctttgtcagggtgatcccctctcaccttatctatt |
2542642 |
T |
|
| Q |
220 |
tatcatctgtg |
230 |
Q |
| |
|
| |||||||| |
|
|
| T |
2542643 |
caacatctgtg |
2542653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 225
Target Start/End: Original strand, 13962881 - 13962974
Alignment:
| Q |
132 |
actcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcaccttatttatttatcat |
225 |
Q |
| |
|
||||||| |||||||||||||| | | ||||||||||||||||||| |||||||| ||| | || ||||| || ||||||||||| || ||||| |
|
|
| T |
13962881 |
actcggtcttggttaatggagcatcaatgggtcctattgtgccagggcgcggccttcgttagggtgatcccctttcaccttatttgttcatcat |
13962974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 36483064 - 36482996
Alignment:
| Q |
65 |
atgattcaaatgggtttttcttctcgatgggttagttggattatgctttgtgttgagacagttgattac |
133 |
Q |
| |
|
|||||||| |||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
36483064 |
atgattcagatgggtttttctactagatgggttcaatggattatgctatgtgttgagacagttgattac |
36482996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 32955218 - 32955431
Alignment:
| Q |
20 |
agtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgctttgtgttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32955218 |
agtaaagcatatgacagattagattgggattacctacgagaaatcatgattcaaatgggtttttcatctcgatgggttagttggattatgctttgtgttg |
32955317 |
T |
|
| Q |
120 |
agacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcaccttatttatt |
219 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| | ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32955318 |
agacggttgattactcggtgttggttaatggagcatcagtgggtcctattgtgctaggacgcggtctccgtcaaggggatcctctctcaccttatttatt |
32955417 |
T |
|
| Q |
220 |
tatcatctgtgctg |
233 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
32955418 |
tatcatttgtgctg |
32955431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 7605966 - 7606169
Alignment:
| Q |
12 |
tggacatcagtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgct |
111 |
Q |
| |
|
||||||| |||||||| ||||| ||| ||||||||||||| |||||||| || ||||||||||||||||| || |||||||||||||| || |||||||| |
|
|
| T |
7605966 |
tggacattagtaaagcttatgatagactagattgggattatctacgagatatcatgattcaaatgggtttctcatctcgatgggttagctgaattatgct |
7606065 |
T |
|
| Q |
112 |
ttgtgttgagacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcacct |
211 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||| | | |||||||||||| ||||| |||| ||| ||||| || ||||| || |||||| |
|
|
| T |
7606066 |
ttgtgttgagacggttgattactcggtcttggttaatggagcatcaaagggtcctattgtaccagggcgcgaccttcgtcagggtgatcccctttcacct |
7606165 |
T |
|
| Q |
212 |
tatt |
215 |
Q |
| |
|
|||| |
|
|
| T |
7606166 |
tatt |
7606169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 328051 - 328122
Alignment:
| Q |
62 |
attatgattcaaatgggtttttcttctcgatgggttagttggattatgctttgtgttgagacagttgattac |
133 |
Q |
| |
|
||||||||||| |||||||||||| || |||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
328051 |
attatgattcagatgggtttttctgctagatgggttcagtggattatgctatgcgttgagacagttgattac |
328122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 3964661 - 3964448
Alignment:
| Q |
12 |
tggacatcagtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgct |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3964661 |
tggacattagtaaagcatatgacagattagattgggattacctacgagaaatcatgattcaaatgggtttttcatctcgatgggttagttggattatgct |
3964562 |
T |
|
| Q |
112 |
ttgtgttgagacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcacct |
211 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||||||||| | | ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3964561 |
ttgtgttgagacggttgattactcagtattggttaatggagcatcaatgggtcctattgtgcaaggacgcggactccgtcaaggggatcctctctcacct |
3964462 |
T |
|
| Q |
212 |
tatttatttatcat |
225 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3964461 |
tatttatttatcat |
3964448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 24018433 - 24018522
Alignment:
| Q |
62 |
attatgattcaaatgggtttttcttctcgatgggttagttggattatgctttgtgttgagacagttgattactcggttttggttaatgga |
151 |
Q |
| |
|
|||||| |||||| ||| ||||| ||| | |||||||||| ||||||| | ||||||||||| || || || | |||| ||||||||||| |
|
|
| T |
24018433 |
attatggttcaaaagggattttcatcttgttgggttagtttgattatgttatgtgttgagacggtagactattaggttctggttaatgga |
24018522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 10997805 - 10998024
Alignment:
| Q |
12 |
tggacatcagtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttct-tctcgatgggttagttggattatgc |
110 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
10997805 |
tggacattagtaaagcatatgatagattagattgggattacctacgagaaatcatgattcaaatgggattttttatctcgatgggttagttggattatgc |
10997904 |
T |
|
| Q |
111 |
tttgtgttgagacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcacc |
210 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10997905 |
tttgtgttgagacggttgattactcgattttggttaatggagcatcagtgggtcctattgtgccaggacgcggcctccgtcagggggatcctctctcacc |
10998004 |
T |
|
| Q |
211 |
ttatttatttatcatctgtg |
230 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
10998005 |
ttatttatttatcatttgtg |
10998024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 32285132 - 32284914
Alignment:
| Q |
12 |
tggacatcagtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgct |
111 |
Q |
| |
|
||||||| |||||||| ||||| | | ||||||||||||| ||||||||||| ||||||||| | ||||| || |||||||||||||||||||||||||| |
|
|
| T |
32285132 |
tggacattagtaaagcttatgatatactagattgggattatctacgagaaatcatgattcaattaggtttctcatctcgatgggttagttggattatgct |
32285033 |
T |
|
| Q |
112 |
ttgtgttgagacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcacct |
211 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||| | |||||||||||||| ||||| || ||||| ||||| || |||||||| |||||| |
|
|
| T |
32285032 |
ttgtgttgagacggttgattactcggtcttggttaatggagcatcggtgggtcctattgtaccagggcgtggccttcgtcagggtgatcctctttcacct |
32284933 |
T |
|
| Q |
212 |
tatttatttatcatctgtg |
230 |
Q |
| |
|
||||| || ||||| |||| |
|
|
| T |
32284932 |
tatttgttcatcatttgtg |
32284914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 26706030 - 26706187
Alignment:
| Q |
20 |
agtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgctttgtgttg |
119 |
Q |
| |
|
|||||||| ||||| || ||||||||||| || |||| ||| || ||||||||||||||||| || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
26706030 |
agtaaagcttatgataggttagattgggactatctacaagatatcatgattcaaatgggtttctcatctcgatgggttagctggattatgctttgtgttg |
26706129 |
T |
|
| Q |
120 |
agacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccagg |
177 |
Q |
| |
|
|||| ||||||||||| || |||||||||| ||| | |||||| ||||||| ||||| |
|
|
| T |
26706130 |
agacggttgattactccgtcttggttaatgcagcatcggtgggttctattgtaccagg |
26706187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 46092883 - 46092662
Alignment:
| Q |
12 |
tggacatcagtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgct |
111 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||| | |
|
|
| T |
46092883 |
tggacattagtaaagcatatgatagattagattgggattacctacgaggaatcatgattcaaatgggtttttcatcttgatgggttagttggattatgtt |
46092784 |
T |
|
| Q |
112 |
ttgtgttgagacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcacct |
211 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||||| | ||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
46092783 |
ttgtgttgagacggttgattactcagtttttgttaatggagcatcagtgggtcctattgttccaggacgcggcctccgtcagggagatcctctctcacct |
46092684 |
T |
|
| Q |
212 |
tatttatttatcatctgtgctg |
233 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
46092683 |
tatttatttatcatttgtgctg |
46092662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 45276602 - 45276466
Alignment:
| Q |
14 |
gacatcagtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgcttt |
113 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| || || || || || |||||||| ||| | ||||| ||| || | ||||||||||||| |
|
|
| T |
45276602 |
gacatcagcaaagcttatgacagattagattgggagtatctccgtgatataatgattcagatgagattttcagagaagtggattcgatggattatgcttt |
45276503 |
T |
|
| Q |
114 |
gtgttgagacagttgattactcggttttggttaatgg |
150 |
Q |
| |
|
|||||||||| || |||||| | |||||||| ||||| |
|
|
| T |
45276502 |
gtgttgagaccgtcgattacacagttttggtcaatgg |
45276466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 10211075 - 10211269
Alignment:
| Q |
20 |
agtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgctttgtgttg |
119 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| ||||| || |||| |||||||||||| || ||| |||||||||||||||||||||||||||||| |
|
|
| T |
10211075 |
agtaaagcttatgatagattagactgggattaccttcgagatatcatgactcaaatgggtttctcctctagatgggttagttggattatgctttgtgttg |
10211174 |
T |
|
| Q |
120 |
agacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcaccttat |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| | |||||||||||||||||||| |||| ||| |||||||| |||||||| ||||||||| |
|
|
| T |
10211175 |
agacagttgattactcggtcttggttaatggagcatcggtgggtcctattgtgccagggcgcgaccttcgtcaaggtgatcctctttcaccttat |
10211269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 23772188 - 23771970
Alignment:
| Q |
12 |
tggacatcagtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgct |
111 |
Q |
| |
|
||||||| |||||||| ||||| ||| ||||||||||||| |||||||| || ||||||||||||||||| || |||||||||||||| || |||||||| |
|
|
| T |
23772188 |
tggacattagtaaagcttatgatagactagattgggattatctacgagatatcatgattcaaatgggtttctcatctcgatgggttagctgtattatgct |
23772089 |
T |
|
| Q |
112 |
ttgtgttgagacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcacct |
211 |
Q |
| |
|
|||||||||||| | |||||| || || | |||||| ||||| |||| |||||||||| ||||| || |||| ||||| || ||||| | |||||| |
|
|
| T |
23772088 |
ttgtgttgagacggatgattattcagtctaggttaacggagcaccagtgtgtcctattgtaccagggtgcagccttcgtcagggtgatcccatttcacct |
23771989 |
T |
|
| Q |
212 |
tatttatttatcatctgtg |
230 |
Q |
| |
|
|||||||| ||||| |||| |
|
|
| T |
23771988 |
tatttattcatcatttgtg |
23771970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 27175607 - 27175711
Alignment:
| Q |
106 |
tatgctttgtgttgagacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctc |
205 |
Q |
| |
|
|||||||||||||||||| | || |||||||| |||||||||||| | | || ||||||||| |||||||||| ||||| ||||| ||||||| || |
|
|
| T |
27175607 |
tatgctttgtgttgagaccatagactactcggtcttggttaatggaacatatgtaggtcctattatgccaggacgtggccttcgtcagagggatcccctt |
27175706 |
T |
|
| Q |
206 |
tcacc |
210 |
Q |
| |
|
||||| |
|
|
| T |
27175707 |
tcacc |
27175711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 51194239 - 51194021
Alignment:
| Q |
12 |
tggacatcagtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgct |
111 |
Q |
| |
|
||||||| |||||||| ||||| ||| |||||||| |||| |||||||| || ||||||||||||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
51194239 |
tggacattagtaaagcttatgatagactagattggaattatctacgagatatcatgattcaaatgggtttctcatctcgatcggttagttggattatgct |
51194140 |
T |
|
| Q |
112 |
ttgtgttgagacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcacct |
211 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||||||| |||| | |||||||||||||| ||||| |||| ||| |||||||| |||||||| |||||| |
|
|
| T |
51194139 |
ttgtgttgagacaattgattactcgatcttggttaatagagcatcggtgggtcctattgtaccagggcgcgaccttcgtcaaggtgatcctctttcacct |
51194040 |
T |
|
| Q |
212 |
tatttatttatcatctgtg |
230 |
Q |
| |
|
||||| || ||||| |||| |
|
|
| T |
51194039 |
tatttgttcatcatttgtg |
51194021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 230
Target Start/End: Original strand, 21687613 - 21687807
Alignment:
| Q |
36 |
gattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgctttgtgttgagacagttgattactc |
135 |
Q |
| |
|
||||||||||||| ||| ||||||| || |||||||||||||| ||||| ||| |||||||||||| |||||| |||||||||||||| ||||| ||||| |
|
|
| T |
21687613 |
gattagattgggactacttacgagatatcatgattcaaatggggttttcctctagatgggttagttagattatcctttgtgttgagacggttgactactc |
21687712 |
T |
|
| Q |
136 |
ggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcaccttatttatttatcatctgtg |
230 |
Q |
| |
|
| | |||||||||||||| | ||||||||||||||||||||| ||| ||| | | | || |||||||||||||||||||| || |||||||||| |
|
|
| T |
21687713 |
gatcttggttaatggagcatcagtgggtcctattgtgccagggtgcgaccttcattagggtgatcctctctcaccttatttgttcatcatctgtg |
21687807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 8563905 - 8563975
Alignment:
| Q |
161 |
ggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcaccttatttatttatcatctgtgc |
231 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||||||||||| || || ||||| ||||| |||||||| |
|
|
| T |
8563905 |
ggtcctattattccaggacgcggtctccgtcaaggggatcctctgtccccctatttgtttattatctgtgc |
8563975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 30470911 - 30470862
Alignment:
| Q |
101 |
tggattatgctttgtgttgagacagttgattactcggttttggttaatgg |
150 |
Q |
| |
|
||||||||||||||||||||||| || |||||| | |||||||| ||||| |
|
|
| T |
30470911 |
tggattatgctttgtgttgagaccgtcgattacacagttttggtcaatgg |
30470862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 10983232 - 10983188
Alignment:
| Q |
17 |
atcagtaaagcatatgacagattagattgggattacctacgagaa |
61 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| || ||||||||| |
|
|
| T |
10983232 |
atcagtaaggcatatgacagaatagattgggaatatctacgagaa |
10983188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 214235 - 214456
Alignment:
| Q |
12 |
tggacatcagtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgct |
111 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||||||||||| |||||||| || ||| ||||||||||||| || ||||||||| |||| ||||||||||| |
|
|
| T |
214235 |
tggacatcagtaaagcttatgatagactagattgggattatctacgagatatcatgcttcaaatgggtttctcatctcgatggattagctggattatgct |
214334 |
T |
|
| Q |
112 |
ttgtgttgagacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcacct |
211 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||| | |||| ||||||| | ||||||| |||||| ||||| || ||||| || |||||| |
|
|
| T |
214335 |
ttgtgttgaggcagttgattactcggtcttggttaatggagcatcggtggatcctattctaccaggacacggccttcgtcagggtgatcccctttcacct |
214434 |
T |
|
| Q |
212 |
tatttatttatcatctgtgctg |
233 |
Q |
| |
|
||||| || ||||| ||||||| |
|
|
| T |
214435 |
tatttgttcatcatttgtgctg |
214456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 54252 - 54462
Alignment:
| Q |
20 |
agtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgctttgtgttg |
119 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||| || ||||| || ||||||||||||||||| || |||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
54252 |
agtaaagcttatgatagactagattgggattatctgcgagatatcatgattcaaatgggtttctcgtctcaatgggttagctggattatgttttgtgttg |
54351 |
T |
|
| Q |
120 |
agacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcctccgtcaaggggatcctctctcaccttatttatt |
219 |
Q |
| |
|
|||| ||| |||||||||| |||||||||||||| || |||||||||||| | | ||| ||||||| ||||| ||||| || || ||||||||||| || |
|
|
| T |
54352 |
agacggttaattactcggtcttggttaatggagcattggtgggtcctattttactagggtgcggccttcgtcagggggaccccctttcaccttatttgtt |
54451 |
T |
|
| Q |
220 |
tatcatctgtg |
230 |
Q |
| |
|
||||| |||| |
|
|
| T |
54452 |
catcatttgtg |
54462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0577 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 4548 - 4382
Alignment:
| Q |
20 |
agtaaagcatatgacagattagattgggattacctacgagaaattatgattcaaatgggtttttcttctcgatgggttagttggattatgctttgtgttg |
119 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| || |||| |||||||||||| || |||||||||||| | |||| |||||||| ||||| |
|
|
| T |
4548 |
agtaaagcttatgatagattagattgggattacctacgagatatcatgaatcaaatgggtttctcctctcgatgggtttgctggactatgctttatgttg |
4449 |
T |
|
| Q |
120 |
agacagttgattactcggttttggttaatggagctttagtgggtcctattgtgccaggacgcggcct |
186 |
Q |
| |
|
|||| |||||||||||| | ||||||| |||||| | |||||| ||||||||| ||| |||||||| |
|
|
| T |
4448 |
agacggttgattactcgatcttggttattggagcatcggtgggttctattgtgctagggcgcggcct |
4382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 7140 - 7072
Alignment:
| Q |
65 |
atgattcaaatgggtttttcttctcgatgggttagttggattatgctttgtgttgagacagttgattac |
133 |
Q |
| |
|
|||||||| |||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
7140 |
atgattcagatgggtttttctactagatgggttcaatggattatgctatgtgttgagacagttgattac |
7072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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